Equivalence class NR_4.0_90633.14 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|X (rep) | 23S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
| 2 | 5HL7|1|X | 23S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2016-12-21 |
| 3 | 4WFA|1|X | 23S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2015-10-21 |
| 4 | 5HKV|1|X | 23s ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2017-05-03 |
| 5 | 4WCE|1|X | 23S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2015-10-21 |
| 6 | 4WFB|1|X | 23S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
| 7 | 5NRG|1|X | 23S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2017-08-09 |
| 8 | 6S0Z|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2019-08-21 |
| 9 | 6HMA|1|A | 23S ribosomal RNA | Staphylococcus aureus | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2018-11-14 |
| 10 | 6S0X|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2019-08-21 |
| 11 | 5NGM|1|AA | 23S Ribosomal RNA | Staphylococcus aureus | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2017-10-04 |
| 12 | 6DDG|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2019-03-20 |
| 13 | 6DDD|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2019-03-20 |
| 14 | 6S12|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2019-08-21 |
| 15 | 6SJ6|1|A | 23S ribosomal RNA | Staphylococcus aureus | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2020-04-08 |
| 16 | 5T7V|1|B | 23S ribosomal RNA | Staphylococcus aureus | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2017-05-31 |
| 17 | 5ND8|1|A | 23S ribosomal RNA | Staphylococcus aureus | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
| 18 | 5ND9|1|A | 23S ribosomal RNA | Staphylococcus aureus | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
| 19 | 5LI0|1|A | 23S ribosomal RNA | Staphylococcus aureus | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2016-12-28 |
| 20 | 5TCU|1|B | 23S RRNA | Staphylococcus aureus | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2017-05-24 |
| 21 | 6S13|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 2019-08-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_90633.14 | NR_4.0_90633.13 | 3.121 | (20) 5HKV|1|X, 4WFB|1|X, 4WFA|1|X, 4WF9|1|X, 4WCE|1|X, 6S13|1|A, 6S12|1|A, 6S0Z|1|A, 6S0X|1|A, 6HMA|1|A, 6DDG|1|1, 6DDD|1|1, 5TCU|1|B, 5T7V|1|B, 5NRG|1|X, 5NGM|1|AA, 5ND9|1|A, 5ND8|1|A, 5LI0|1|A, 5HL7|1|X | (1) 6SJ6|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_90633.14 | NR_4.0_90633.15 | 3.129 | (21) 5TCU|1|B, 6S0X|1|A, 6SJ6|1|A, 4WCE|1|X, 5HKV|1|X, 5ND9|1|A, 5T7V|1|B, 6HMA|1|A, 6S13|1|A, 4WFB|1|X, 5ND8|1|A, 6DDG|1|1, 6S12|1|A, 4WFA|1|X, 5LI0|1|A, 5NRG|1|X, 6DDD|1|1, 6S0Z|1|A, 4WF9|1|X, 5HL7|1|X, 5NGM|1|AA | (0) | (4) 6WQQ|1|1, 6WQN|1|1, 6WRU|1|1, 6WRS|1|1 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6SJ6|1|A | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2585 |
| 2 | 6HMA|1|A | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2831 |
| 3 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 |
| 4 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2711 |
| 5 | 5HKV|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2695 |
| 6 | 5HL7|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2705 |
| 7 | 4WCE|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2708 |
| 8 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 |
| 9 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 |
| 10 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 |
| 11 | 6DDG|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 12 | 6DDD|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 13 | 5ND9|1|A | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2914 |
| 14 | 5ND8|1|A | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2912 |
| 15 | 5LI0|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2914 |
| 16 | 5T7V|1|B | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2768 |
| 17 | 5TCU|1|B | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2755 |
| 18 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 |
| 19 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 |
| 20 | 6S12|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2905 |
| 21 | 6S13|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 2905 |