Equivalence class NR_4.0_90759.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QDV|1|2+ 6QDV|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Intron lariat: MINX RNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 2 | 6ICZ|1|H+ 6ICZ|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2snRNA, U6snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 3 | 6ID1|1|H+ 6ID1|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2snRNA, U6snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 4 | 5XJC|1|H+ 5XJC|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens small nuclear RNA (U2) gene, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_90759.3 | NR_4.0_90759.2 | 3.65 | (2) 6QDV|1|2+6QDV|1|6, 5XJC|1|H+5XJC|1|F | (2) 6ID1|1|H+6ID1|1|F, 6ICZ|1|H+6ICZ|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_90759.3 | NR_4.0_90759.4 | 3.70 | (4) 6QDV|1|2+6QDV|1|6, 6ID1|1|H+6ID1|1|F, 6ICZ|1|H+6ICZ|1|F, 5XJC|1|H+5XJC|1|F | (0) | (1) 6QX9|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6QDV|1|2+6QDV|1|6 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 120 |
| 2 | 6ICZ|1|H+6ICZ|1|F | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 140 |
| 3 | 5XJC|1|H+5XJC|1|F | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 140 |
| 4 | 6ID1|1|H+6ID1|1|F | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 136 |