Equivalence class NR_4.0_90795.7 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 6KQE|1|I (rep) | RNA (5'-R(*UP*CP*GP*A)-3') | synthetic construct | Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt | X-ray diffraction | 3.3 | 2020-03-11 | |||
2 | 5VI5|1|Q | RNA (5'-R(*UP*CP*GP*A)-3') | synthetic construct | Structure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubble | X-ray diffraction | 3.2 | 2017-07-26 | |||
3 | 4XLN|1|T | RNA (5'-D(P*UP*CP*GP*A)-3') | synthetic construct | Crystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNA | X-ray diffraction | 4 | 2015-09-23 | |||
4 | 4XLN|1|Q | RNA (5'-D(P*UP*CP*GP*A)-3') | synthetic construct | Crystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNA | X-ray diffraction | 4 | 2015-09-23 | |||
5 | 8GZG|1|3 | RNA (5'-R(*UP*CP*GP*A)-3') | synthetic construct | Cryo-EM structure of Synechocystis sp. PCC 6803 RPitc | Electron microscopy | 3.13 | 2023-04-19 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 4XLN|1|T | Crystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNA | X-RAY DIFFRACTION | 4 | 4 |
2 | 4XLN|1|Q | Crystal structure of T. aquaticus transcription initiation complex containing bubble promoter and RNA | X-RAY DIFFRACTION | 4 | 4 |
3 | 8GZG|1|3 | Cryo-EM structure of Synechocystis sp. PCC 6803 RPitc | ELECTRON MICROSCOPY | 3.13 | 4 |
4 | 6KQE|1|I | Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt | X-RAY DIFFRACTION | 3.3 | 4 |
5 | 5VI5|1|Q | Structure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubble | X-RAY DIFFRACTION | 3.2 | 4 |