Equivalence class NR_4.0_91171.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8JDK|1|F (rep) | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.26 | 2023-12-06 |
| 2 | 8JDL|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | Electron microscopy | 2.42 | 2023-12-06 |
| 3 | 8JDJ|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.5 | 2023-12-06 |
| 4 | 8JDM|1|F | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | Electron microscopy | 2.67 | 2023-12-06 |
| 5 | 8Y0X|1|L8 | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | Dormant ribosome with SERBP1 | Electron microscopy | 3.3 | 2024-02-07 |
| 6 | 8Y0W|1|L8 | 5.8S ribosomal RNA | 5.8S rRNA | Homo sapiens | Eukarya | RF00002 | dormant ribosome with eIF5A, eEF2 and SERBP1 | Electron microscopy | 3.4 | 2024-02-07 |
| 7 | 8BF9|1|8 | 5.8S ribosomal RNA | RNA (156-MER) | Ovis aries | Eukarya | RF00002 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | Electron microscopy | 2.69 | 2023-11-01 |
| 8 | 6SXO|1|L8 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF00002 | Cryo-EM structure of the human Ebp1-ribosome complex | Electron microscopy | 3.3 | 2020-02-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6SXO|1|L8 | Cryo-EM structure of the human Ebp1-ribosome complex | ELECTRON MICROSCOPY | 3.3 | 58 |
| 2 | 8Y0X|1|L8 | Dormant ribosome with SERBP1 | ELECTRON MICROSCOPY | 3.3 | 156 |
| 3 | 8Y0W|1|L8 | dormant ribosome with eIF5A, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.4 | 156 |
| 4 | 8JDK|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.26 | 155 |
| 5 | 8JDJ|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.5 | 155 |
| 6 | 8JDM|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) | ELECTRON MICROSCOPY | 2.67 | 155 |
| 7 | 8JDL|1|F | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | ELECTRON MICROSCOPY | 2.42 | 155 |
| 8 | 8BF9|1|8 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | ELECTRON MICROSCOPY | 2.69 | 98 |