Equivalence class NR_4.0_91467.8 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QZP|1|L5+ 6QZP|1|L8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA (3773-MER), 5.8S rRNA (156-MER) | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 2 | 6EK0|1|L5+ 6EK0|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 |
| 3 | 5T2C|1|A+ 5T2C|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 4 | 4UG0|1|L5+ 4UG0|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 5 | 6IP5|1|1A+ 6IP5|1|1C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | Electron microscopy | 3.9 | 2019-05-29 |
| 6 | 6IP8|1|1A+ 6IP8|1|1C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | Electron microscopy | 3.9 | 2019-05-29 |
| 7 | 5AJ0|1|A2+ 5AJ0|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
| 8 | 5LKS|1|L5+ 5LKS|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | Electron microscopy | 3.6 | 2017-04-26 |
| 9 | 5A8L|1|A | Large subunit ribosomal RNA | 28S RIBOSOMAL RNA | Homo sapiens | Eukarya | RF02543 | Human eRF1 and the hCMV nascent peptide in the translation termination complex | Electron microscopy | 3.8 | 2015-12-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_91467.8 | NR_4.0_91467.7 | 3.76 | (7) 6QZP|1|L5+6QZP|1|L8, 6EK0|1|L5+6EK0|1|L8, 5T2C|1|A+5T2C|1|C, 5LKS|1|L5+5LKS|1|L8, 5AJ0|1|A2+5AJ0|1|A3, 5A8L|1|A, 4UG0|1|L5+4UG0|1|L8 | (2) 6IP8|1|1A+6IP8|1|1C, 6IP5|1|1A+6IP5|1|1C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_91467.8 | NR_4.0_65061.1 | 3.79 | (9) 5T2C|1|A+5T2C|1|C, 6IP8|1|1A+6IP8|1|1C, 4UG0|1|L5+4UG0|1|L8, 5AJ0|1|A2+5AJ0|1|A3, 6IP5|1|1A+6IP5|1|1C, 6QZP|1|L5+6QZP|1|L8, 5A8L|1|A, 5LKS|1|L5+5LKS|1|L8, 6EK0|1|L5+6EK0|1|L8 | (0) | (7) 6OM0|1|t+6OM0|1|D, 6OLE|1|t+6OLE|1|D, 6OLF|1|t+6OLF|1|D, 6OLI|1|t+6OLI|1|D, 6OLZ|1|A2+6OLZ|1|A3, 6OM7|1|t+6OM7|1|D, 6OLG|1|A2+6OLG|1|A3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5AJ0|1|A2+5AJ0|1|A3 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 3612 |
| 2 | 6QZP|1|L5+6QZP|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3696 |
| 3 | 6EK0|1|L5+6EK0|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3672 |
| 4 | 6IP5|1|1A+6IP5|1|1C | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 3717 |
| 5 | 6IP8|1|1A+6IP8|1|1C | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 3667 |
| 6 | 5LKS|1|L5+5LKS|1|L8 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 3776 |
| 7 | 5T2C|1|A+5T2C|1|C | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 3776 |
| 8 | 4UG0|1|L5+4UG0|1|L8 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 3776 |
| 9 | 5A8L|1|A | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 253 |