Equivalence class NR_4.0_92081.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A (rep) | SGRNA | synthetic construct | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 2016-03-23 | |||
| 2 | 5FW2|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.68 | 2016-06-15 | |||
| 3 | 5VW1|1|C | sgRNA | Listeria monocytogenes | Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-ray diffraction | 2.6 | 2017-06-28 | |||
| 4 | 4UN4|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 | |||
| 5 | 4UN5|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |||
| 6 | 5FW3|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-ray diffraction | 2.7 | 2016-06-15 | |||
| 7 | 4UN3|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |||
| 8 | 5FW1|1|A | SGRNA | synthetic construct | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 2016-04-20 |
Release history
| Release | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 |
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| Date | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_92081.5 | NR_4.0_43299.1 | 3.67 | (1) 5VW1|1|C | (7) 4UN3|1|A, 4UN4|1|A, 4UN5|1|A, 5FQ5|1|A, 5FW1|1|A, 5FW2|1|A, 5FW3|1|A | (0) |
| NR_4.0_92081.5 | NR_4.0_92081.6 | 3.67 | (7) 4UN3|1|A, 4UN4|1|A, 4UN5|1|A, 5FQ5|1|A, 5FW1|1|A, 5FW2|1|A, 5FW3|1|A | (1) 5VW1|1|C | (3) 6AEB|1|A, 6AEB|1|E, 6AEG|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4UN5|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 | |
| 2 | 5FQ5|1|A | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 83 | |
| 3 | 4UN4|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 | |
| 4 | 5FW1|1|A | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 81 | |
| 5 | 5FW3|1|A | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-RAY DIFFRACTION | 2.7 | 81 | |
| 6 | 5FW2|1|A | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.68 | 81 | |
| 7 | 4UN3|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 | |
| 8 | 5VW1|1|C | Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-RAY DIFFRACTION | 2.6 | 73 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: