#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction1272014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-ray diffraction0.97272016-04-13
36Y0Y|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666UX-ray diffraction0.95272021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.04272003-11-25
57QP2|1|ARNA (27-MER)synthetic construct1-deazaguanosine modified-RNA Sarcin Ricin LoopX-ray diffraction0.9272022-07-20
64NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.01272014-11-19
76ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-ray diffraction0.9272020-12-16
83DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.97272009-03-24
93DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction1272009-03-24
107L3R|1|ARNA (27-MER)synthetic construct23S Sarcin Ricin Loop with a 3-deazapurine A2670X-ray diffraction1.01272021-05-05
114Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-ray diffraction1272015-11-18
127JJE|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine dithiophosphate residue.X-ray diffraction1.25272020-12-23
133DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction1272009-03-24
144NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.16272014-12-10
155NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-ray diffraction0.85272017-07-26
163S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.1272012-04-11
175MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-ray diffraction0.85272018-01-17
187QSH|1|A23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragmentsynthetic construct23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648X-ray diffraction0.86252023-01-25
193DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.96272009-03-24
203DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction1272009-03-24
21483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.11271999-10-08
223S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.2272012-04-11
237JJD|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine monothiophosphate residue.X-ray diffraction1.21272020-12-23
241MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.41272003-02-25
25480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.5271999-10-08
266Y0T|1|BRNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.393272021-02-17
276Y0T|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.393272021-02-17
287M3V|1|ARNA (27-MER)synthetic constructRNA bulged-G motifX-ray diffraction2.19272022-03-23
297JJF|1|ARNA/DNA (27-mer)Escherichia coliSarcin-ricin loop with modified residue.X-ray diffraction1.2272020-12-23
301JBR|1|D31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-ray diffraction2.15312001-10-26
317EEN|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.7262022-03-23
327EEN|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.7272022-03-23
337EEM|1|ARNA (27-MER)synthetic constructRNA bulged-G motifX-ray diffraction2.593262022-03-23
341JBT|1|C29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-ray diffraction2.7292001-10-26
356ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.44262020-12-16
367EEN|1|DDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.7262022-03-23
371JBT|1|D29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-ray diffraction2.7292001-10-26
381JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.97292001-10-26
397EEN|1|CDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.7262022-03-23
406ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.44262020-12-16
416ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.44262020-12-16
421JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.97292001-10-26
437EEO|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction2.701242022-03-23
447EEO|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction2.701232022-03-23
457UCR|1|ASarcin-Ricin loop RNAHomo sapiensJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-ray diffraction1272022-07-20

Release history

Release3.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
11MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4127
27EEO|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70124
37EEO|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70123
44NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION127
5480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
63S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.127
73DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9727
83DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION127
95D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9727
106ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.927
117M3V|1|ARNA bulged-G motifX-RAY DIFFRACTION2.1927
124NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1627
134Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION127
147JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
155NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8527
165MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8527
17483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1127
181Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0427
197UCR|1|AJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-RAY DIFFRACTION127
207QP2|1|A1-deazaguanosine modified-RNA Sarcin Ricin LoopX-RAY DIFFRACTION0.927
214NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0127
223DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION127
233DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9627
243DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION127
257JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2127
267JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2527
273S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.227
287L3R|1|A23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.0127
297QSH|1|A23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648X-RAY DIFFRACTION0.8625
307EEM|1|ARNA bulged-G motifX-RAY DIFFRACTION2.59326
316ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4426
326ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4426
336ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4426
347EEN|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.726
357EEN|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.727
367EEN|1|DBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.726
377EEN|1|CBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.726
386Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39327
396Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39327
406Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
411JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
421JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9729
431JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9729
441JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
451JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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