#PDBTitleRNA source organismCompoundsMethodResolutionDate
11JBR|1|D (rep)Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorRestrictocin, Restrictocin, 5'-R(*GP*CP*GP*CP*UP*CP*CP*UP*CP*AP*GP*UP*AP*CP*GP*AP*GP*(A23))-3', 31-mer SRD RNA analog, 5'-R(*GP*GP*AP*AP*CP*CP*GP*GP*AP*GP*CP*GP*C)-3'X-RAY DIFFRACTION2.152001-10-26
21JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGRESTRICTOCIN, RESTRICTOCIN, 29-MER SARCIN/RICIN DOMAIN RNA ANALOG, 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
31JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGRESTRICTOCIN, RESTRICTOCIN, 29-MER SARCIN/RICIN DOMAIN RNA ANALOG, 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
4480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNASARCIN/RICIN DOMAIN FROM 23 S RRNAX-RAY DIFFRACTION1.51999-10-08
54Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662Escherichia coli27-mer SRL RNAX-RAY DIFFRACTION12015-11-18
64NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRL23S ribosomal RNA Sarcin Ricin LoopX-RAY DIFFRACTION12014-11-19
71JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogrestrictocin, restrictocin, 29-mer sarcin/ricin domain RNA analog, 29-mer sarcin/ricin domain RNA analogX-RAY DIFFRACTION1.972001-10-26
81JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogrestrictocin, restrictocin, 29-mer sarcin/ricin domain RNA analog, 29-mer sarcin/ricin domain RNA analogX-RAY DIFFRACTION1.972001-10-26
93DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedSarcin/Ricin Domain from E. Coli 23 S rRNAX-RAY DIFFRACTION0.972009-03-24
101MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNASARCIN/RICIN DOMAIN FROM 23 S RRNAX-RAY DIFFRACTION1.412003-02-25
113DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedSarcin/Ricin Domain from E. Coli 23 S rRNAX-RAY DIFFRACTION12009-03-24
125D99|1|A3DW4 redetermined by direct methods starting from random phase anglesEnterobacteria phage L1RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAX-RAY DIFFRACTION0.972016-04-13
133DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNASarcin/Ricin Domain from E. Coli 23 S rRNAX-RAY DIFFRACTION12009-03-24
143S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAEcoli 23 S rRNA Sarcin Ricin loopX-RAY DIFFRACTION1.12012-04-11
154NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopEscherichia coli23S ribosomal RNA Sarcin Ricin LoopX-RAY DIFFRACTION1.162014-12-10
165NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationEscherichia coliE.Coli 27-mer SRL RNAX-RAY DIFFRACTION0.852017-07-26
173S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAEscherichia coliEcoli 23 S rRNA Sarcin Ricin loopX-RAY DIFFRACTION1.22012-04-11
181Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionSarcin/ricin 23S rRNAX-RAY DIFFRACTION1.042003-11-25
19483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNASARCIN/RICIN RRNA DOMAINX-RAY DIFFRACTION1.111999-10-08
203DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedSarcin/Ricin Domain from E. Coli 23 S rRNAX-RAY DIFFRACTION0.962009-03-24
214NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL23S ribosomal RNA Sarcin Ricin LoopX-RAY DIFFRACTION1.012014-11-19
223DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedSarcin/Ricin Domain from E. Coli 23 S rRNAX-RAY DIFFRACTION12009-03-24

Release history

Release2.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.151
Date2017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-21

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
2480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
31JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
44NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
51JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
63S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
73DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
83DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
95D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
104NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
111JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
124Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
135NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
14483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
151Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
163S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
173DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
183DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
194NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
203DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
211JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531
221MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131