NR_4.0_95956.2

Members (11)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	8PV7\|1\|C4 (rep)	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure	Electron microscopy	2.12	2023-11-15
2	8PVL\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure	Electron microscopy	2.19	2023-12-06
3	8PVK\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure	Electron microscopy	2.55	2023-12-06
4	8PV1\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure	Electron microscopy	2.56	2023-11-15
5	8PV2\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1	Electron microscopy	2.63	2023-11-15
6	8PV3\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure	Electron microscopy	2.8	2023-11-15
7	8PV5\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure	Electron microscopy	2.86	2023-11-15
8	8PV4\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure	Electron microscopy	2.9	2023-11-15
9	8PV6\|1\|C4	5S ribosomal RNA	5S rRNA	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure	Electron microscopy	2.94	2023-11-15
10	8I9R\|1\|C4	5S ribosomal RNA	RNA (119-MER)	Thermochaetoides thermophila DSM 1495	Eukarya	RF00001	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP	Electron microscopy	3.1	2023-05-17
11	7OZS\|1\|3	5S ribosomal RNA	5S rRNA	Chaetomium thermophilum var. thermophilum DSM 1495	Eukarya	RF00001	Structure of the hexameric 5S RNP from C. thermophilum	Electron microscopy	3.5	2022-10-12

Release history

Release	3.312	3.313	3.314	3.315	3.316
Date	2023-12-06	2023-12-13	2023-12-20	2023-12-27	2024-01-03

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	8PV6\|1\|C4	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure	ELECTRON MICROSCOPY	2.94	115
2	8I9R\|1\|C4	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP	ELECTRON MICROSCOPY	3.1	119
3	8PVK\|1\|C4	Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure	ELECTRON MICROSCOPY	2.55	119
4	8PV5\|1\|C4	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure	ELECTRON MICROSCOPY	2.86	119
5	8PVL\|1\|C4	Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure	ELECTRON MICROSCOPY	2.19	119
6	8PV7\|1\|C4	Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure	ELECTRON MICROSCOPY	2.12	119
7	8PV2\|1\|C4	Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1	ELECTRON MICROSCOPY	2.63	119
8	8PV3\|1\|C4	Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure	ELECTRON MICROSCOPY	2.8	119
9	8PV1\|1\|C4	Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure	ELECTRON MICROSCOPY	2.56	119
10	8PV4\|1\|C4	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure	ELECTRON MICROSCOPY	2.9	119
11	7OZS\|1\|3	Structure of the hexameric 5S RNP from C. thermophilum	ELECTRON MICROSCOPY	3.5	119

Equivalence class NR_4.0_95956.2 Obsolete

Release history

Parents

Children