Equivalence class NR_4.0_96169.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7M4Y|1|A (rep) | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF02541 | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | Electron microscopy | 2.5 | 2021-05-19 |
| 2 | 7M4W|1|A | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF02541 | A. baumannii Ribosome-Eravacycline complex: 70S Empty | Electron microscopy | 2.55 | 2021-05-19 |
| 3 | 6YSI|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | Electron microscopy | 2.5 | 2020-09-16 |
| 4 | 7M4V|1|A | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF02541 | A. baumannii Ribosome-Eravacycline complex: 50S | Electron microscopy | 2.54 | 2021-05-19 |
| 5 | 7M4X|1|A | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF02541 | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | Electron microscopy | 2.66 | 2021-05-19 |
| 6 | 6V3A|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 2020-02-05 |
| 7 | 6YHS|1|1 | Large subunit ribosomal RNA | 23S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | Electron microscopy | 2.7 | 2020-09-16 |
| 8 | 6V3B|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 2020-02-05 |
| 9 | 6V3D|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | Electron microscopy | 2.95 | 2020-02-05 |
| 10 | 7M4Z|1|A | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF02541 | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | Electron microscopy | 2.92 | 2021-05-19 |
| 11 | 6V39|1|AN1 | Large subunit ribosomal RNA | 23s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF02541 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 2020-02-05 |
Release history
| Release | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_96169.1 | NR_4.0_29342.2 | 3.179 | (6) 6YHS|1|1, 6V3D|1|AN1, 6V3B|1|AN1, 6V3A|1|AN1, 6V39|1|AN1, 6YSI|1|1 | (5) 7M4V|1|A, 7M4Z|1|A, 7M4Y|1|A, 7M4X|1|A, 7M4W|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_96169.1 | NR_4.0_96169.2 | 3.216 | (11) 6V3B|1|AN1, 7M4X|1|A, 7M4W|1|A, 6V3A|1|AN1, 7M4V|1|A, 6V39|1|AN1, 6YSI|1|1, 7M4Z|1|A, 6YHS|1|1, 7M4Y|1|A, 6V3D|1|AN1 | (0) | (3) 7RYH|1|A, 7RYF|1|A, 7RYG|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6YSI|1|1 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | ELECTRON MICROSCOPY | 2.5 | 2672 |
| 2 | 6YHS|1|1 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | ELECTRON MICROSCOPY | 2.7 | 2672 |
| 3 | 7M4Y|1|A | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | ELECTRON MICROSCOPY | 2.5 | 2715 |
| 4 | 7M4W|1|A | A. baumannii Ribosome-Eravacycline complex: 70S Empty | ELECTRON MICROSCOPY | 2.55 | 2715 |
| 5 | 7M4X|1|A | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | ELECTRON MICROSCOPY | 2.66 | 2715 |
| 6 | 7M4Z|1|A | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | ELECTRON MICROSCOPY | 2.92 | 2715 |
| 7 | 7M4V|1|A | A. baumannii Ribosome-Eravacycline complex: 50S | ELECTRON MICROSCOPY | 2.54 | 2717 |
| 8 | 6V3A|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 2877 |
| 9 | 6V3B|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 2877 |
| 10 | 6V3D|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | ELECTRON MICROSCOPY | 2.95 | 2877 |
| 11 | 6V39|1|AN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 2877 |