Equivalence class NR_all_01175.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1FQZ|1|A (rep) | HEPATITIS C VIRUS IRES DOMAIN IIID | NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE | Solution NMR | 2001-01-17 | |||||
| 2 | 1F84|10|A | HCV-1B IRES RNA DOMAIN IIID | SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID | Solution NMR | 2000-11-17 | |||||
| 3 | 2AGN|1|A | HCV-1B IRES RNA SUB-DOMAIN IIID | Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex | Electron microscopy | 15 | 2006-07-25 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_01175.2 | NR_all_01175.1 | 2.93 | (2) 2AGN|1|A, 1F84|10|A | (1) 1FQZ|1|A | (0) |
| NR_all_01175.2 | NR_all_28302.1 | 2.93 | (1) 1FQZ|1|A | (2) 2AGN|1|A, 1F84|10|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_01175.2 | NR_all_18069.1 | 2.120 | (1) 1FQZ|1|A | (2) 1F84|10|A, 2AGN|1|A | (0) |
| NR_all_01175.2 | NR_all_34881.1 | 2.120 | (1) 1F84|10|A | (2) 1FQZ|1|A, 2AGN|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1FQZ|1|A | NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE | SOLUTION NMR | 27 | |
| 2 | 1F84|10|A | SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID | SOLUTION NMR | 29 | |
| 3 | 2AGN|1|A | Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex | ELECTRON MICROSCOPY | 15 | 28 |