Equivalence class NR_all_03097.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5A2Q|1|3 (rep) | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 2 | 4UJC|1|AC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 3 | 4UJD|1|BC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
Release history
| Release | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_03097.2 | NR_all_03097.1 | 2.32 | (2) 4UJD|1|BC, 4UJC|1|AC | (1) 5A2Q|1|3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_03097.2 | NR_20.0_03097.3 | 2.55 | (3) 5A2Q|1|3, 4UJD|1|BC, 4UJC|1|AC | (0) | (1) 5FLX|1|z |
| NR_all_03097.2 | NR_4.0_03097.3 | 2.55 | (1) 5A2Q|1|3 | (2) 4UJD|1|BC, 4UJC|1|AC | (1) 5FLX|1|z |
| NR_all_03097.2 | NR_all_03097.3 | 2.55 | (3) 4UJD|1|BC, 4UJC|1|AC, 5A2Q|1|3 | (0) | (1) 5FLX|1|z |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJD|1|BC | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 261 |
| 2 | 4UJC|1|AC | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 261 |
| 3 | 5A2Q|1|3 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 257 |