Equivalence class NR_all_03196.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4KZY|1|i (rep) | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-ray diffraction | 7.01 | 2013-07-24 |
| 2 | 4KZZ|1|i | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
| 3 | 4KZX|1|i | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1. | X-ray diffraction | 7.81 | 2013-07-24 |
| 4 | 4UJC|1|C1 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 5 | 4UJD|1|C1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 6 | 4D5L|1|1 | Small subunit ribosomal RNA | 18S RRNA 2 | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-02-04 |
| 7 | 4D61|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 8 | 4UJE|1|B1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
Release history
| Release | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_03196.3 | NR_20.0_03196.4 | 2.35 | (8) 4D5L|1|1, 4KZX|1|i, 4KZZ|1|i, 4UJD|1|C1, 4D61|1|1, 4KZY|1|i, 4UJC|1|C1, 4UJE|1|B1 | (0) | (2) 3JAJ|1|S2, 3JAN|1|S2 |
| NR_all_03196.3 | NR_all_03196.4 | 2.35 | (8) 4KZZ|1|i, 4UJD|1|C1, 4D5L|1|1, 4KZX|1|i, 4KZY|1|i, 4UJC|1|C1, 4UJE|1|B1, 4D61|1|1 | (0) | (2) 3JAJ|1|S2, 3JAN|1|S2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJE|1|B1 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 |
| 2 | 4D5L|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 3 | 4D61|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 4 | 4UJD|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 |
| 5 | 4UJC|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 |
| 6 | 4KZZ|1|i | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 |
| 7 | 4KZY|1|i | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 |
| 8 | 4KZX|1|i | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 |