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Equivalence class NR_all_03196.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14KZY|1|i (rep)Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-ray diffraction7.012013-07-24
24KZZ|1|iSmall subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
34KZX|1|iSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 40S ribosomal subunit in complex with eIF1.X-ray diffraction7.812013-07-24
43JAN|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
53JAJ|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
64UJC|1|C1Small subunit ribosomal RNA18S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30
74UJD|1|C1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30
84D5L|1|1Small subunit ribosomal RNA18S RRNA 2Oryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-02-04
94D61|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateElectron microscopy92015-03-04
104UJE|1|B1Small subunit ribosomal RNA18S Ribosomal RNAOryctolagus cuniculusEukaryaRF01960Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16

Release history

Release2.35
Date2015-08-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_03196.4NR_all_03196.32.35(8) 4UJE|1|B1, 4UJD|1|C1, 4UJC|1|C1, 4KZZ|1|i, 4KZY|1|i, 4KZX|1|i, 4D61|1|1, 4D5L|1|1(2) 3JAN|1|S2, 3JAJ|1|S2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03196.4NR_20.0_03196.52.36(10) 4UJE|1|B1, 3JAN|1|S2, 4D5L|1|1, 4D61|1|1, 4KZY|1|i, 4KZZ|1|i, 4UJC|1|C1, 4UJD|1|C1, 3JAJ|1|S2, 4KZX|1|i(0) (3) 3JAG|1|9, 3JAH|1|9, 3JAI|1|9
NR_all_03196.4NR_4.0_03196.52.36(2) 3JAJ|1|S2, 3JAN|1|S2(8) 4D61|1|1, 4UJC|1|C1, 4D5L|1|1, 4KZZ|1|i, 4KZY|1|i, 4UJE|1|B1, 4KZX|1|i, 4UJD|1|C1(3) 3JAG|1|9, 3JAH|1|9, 3JAI|1|9
NR_all_03196.4NR_all_03196.52.36(10) 4KZY|1|i, 4UJC|1|C1, 4UJD|1|C1, 4UJE|1|B1, 3JAJ|1|S2, 3JAN|1|S2, 4D61|1|1, 4KZX|1|i, 4KZZ|1|i, 4D5L|1|1(0) (3) 3JAI|1|9, 3JAG|1|9, 3JAH|1|9

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14UJD|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.91742
24UJC|1|C1mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.51742
34D61|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
44D5L|1|1Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY91742
54UJE|1|B1Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.91742
63JAJ|1|S2Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
73JAN|1|S2Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
84KZZ|1|iRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.031797
94KZY|1|iRabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.X-RAY DIFFRACTION7.011840
104KZX|1|iRabbit 40S ribosomal subunit in complex with eIF1.X-RAY DIFFRACTION7.811797
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