BGSU RNA Site //

Equivalence class NR_all_03265.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
12KX5|1|A (rep)HIV TAR RNARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSolution NMR2010-07-07
22KDQ|1|BHIV-1 TAR RNASimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSolution NMR2009-06-23
31UUI|1|B5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'Human immunodeficiency virus 1VirusesNMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASolution NMR2004-02-12
42L8H|3|AHIV TAR RNAChemical probe bound to HIV TAR RNASolution NMR2011-03-23
51QD3|1|AHIV-1 TAR RNAHuman immunodeficiency virus 1VirusesHIV-1 TAR RNA/NEOMYCIN B COMPLEXSolution NMR2000-07-12
61UUD|1|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1VirusesNMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASolution NMR2004-03-15
71UTS|2|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1VirusesDesigned HIV-1 TAR Binding LigandSolution NMR2004-02-12
81ARJ|7|NTAR RNAARG-BOUND TAR RNA, NMRSolution NMR1996-11-08
91ANR|2|ARNA REGULATORY ELEMENT TARCIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSolution NMR1997-01-11

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.78
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_03265.2NR_all_03265.12.46(8) 1ANR|2|A, 2L8H|3|A, 2KX5|1|A, 2KDQ|1|B, 1UUI|1|B, 1UUD|1|B, 1UTS|2|B, 1ARJ|7|N(1) 1QD3|1|A(0)
NR_all_03265.2NR_all_70188.12.46(1) 1QD3|1|A(8) 2L8H|3|A, 2KX5|1|A, 2KDQ|1|B, 1UUI|1|B, 1UUD|1|B, 1UTS|2|B, 1ARJ|7|N, 1ANR|2|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03265.2NR_all_03265.32.79(9) 1UTS|2|B, 2L8H|3|A, 1QD3|1|A, 2KX5|1|A, 1ARJ|7|N, 2KDQ|1|B, 1ANR|2|A, 1UUI|1|B, 1UUD|1|B(0) (3) 5J1O|2|B, 5J2W|1|B, 5J0M|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11UTS|2|BDesigned HIV-1 TAR Binding LigandSOLUTION NMR29
21UUI|1|BNMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASOLUTION NMR29
31UUD|1|BNMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASOLUTION NMR29
41ARJ|7|NARG-BOUND TAR RNA, NMRSOLUTION NMR29
52KDQ|1|BSimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSOLUTION NMR29
62KX5|1|ARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSOLUTION NMR29
72L8H|3|AChemical probe bound to HIV TAR RNASOLUTION NMR29
81QD3|1|AHIV-1 TAR RNA/NEOMYCIN B COMPLEXSOLUTION NMR29
91ANR|2|ACIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSOLUTION NMR29