#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
34U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
44U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
54U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
64U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
74U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
94V8Z|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
104V8Y|1|B218S RIBOSOMAL RNASaccharomyces cerevisiaeCryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
114U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
125FCJ|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
134U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
145FCI|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
154U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
164U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
174U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
184U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
194U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
204U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
214U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
224U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
234U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
244U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
254U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
264U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
274U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
284U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
294U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
304U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
314U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
324U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
334U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
344U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
354U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
364U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
374U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
385FCJ|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
395FCI|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
404U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
413J6Y|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
424U4O|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
433J78|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
443J77|1|1S18S ribosomal RNASaccharomyces cerevisiaeStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
453J6X|1|1S18S ribosomal RNASaccharomyces cerevisiaeS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
464U4O|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
474V7R|1|C118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
484V7R|1|A118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
494V6I|1|CA18S rRNASaccharomyces cerevisiaeLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09

Release history

Release2.752.762.77
Date2016-05-132016-05-202016-05-27

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03510.2NR_20.0_03510.32.78(49) 4U4Z|1|2, 4U50|1|2, 4U51|1|2, 4U52|1|2, 4U53|1|2, 4U55|1|2, 4U56|1|2, 3J6X|1|1S, 4U6F|1|2, 3J77|1|1S, 4V6I|1|CA, 4U3M|1|2, 4V7R|1|C1, 4U3N|1|2, 4V88|1|A6, 4U3U|1|2, 4V8Z|1|B2, 4U4N|1|2, 5FCI|1|6, 4U4O|1|2, 5FCJ|1|6, 4U4Q|1|2, 4U4R|1|2, 4U4U|1|2, 4U4Y|1|2, 4U4Z|1|6, 4U50|1|6, 4U51|1|6, 4U52|1|6, 4U53|1|6, 4U55|1|6, 4U56|1|6, 3J6Y|1|1S, 4U6F|1|6, 3J78|1|1S, 4V7R|1|A1, 4U3M|1|6, 4V88|1|A2, 4U3N|1|6, 4V8Y|1|B2, 4U3U|1|6, 5FCI|1|2, 4U4N|1|6, 5FCJ|1|2, 4U4O|1|6, 4U4Q|1|6, 4U4R|1|6, 4U4U|1|6, 4U4Y|1|6(0) (2) 5DC3|1|6, 5DC3|1|2
NR_all_03510.2NR_3.0_03510.32.78(14) 4U4U|1|2, 4U4R|1|2, 4U4Q|1|2, 4U4Q|1|6, 4U4R|1|6, 4V88|1|A2, 4U52|1|2, 4U4U|1|6, 4U52|1|6, 4U3M|1|2, 4V88|1|A6, 4U3U|1|2, 4U3M|1|6, 4U3U|1|6(35) 4U4O|1|2, 4U4Y|1|2, 4U4Z|1|2, 4U50|1|2, 4U51|1|2, 4U53|1|2, 4U55|1|2, 4U56|1|2, 4V6I|1|CA, 4V7R|1|C1, 4V8Z|1|B2, 5FCI|1|6, 5FCJ|1|6, 3J6Y|1|1S, 3J78|1|1S, 4U3N|1|6, 4U4N|1|6, 4U4O|1|6, 4U4Y|1|6, 4U4Z|1|6, 4U50|1|6, 4U51|1|6, 4U53|1|6, 4U55|1|6, 4U56|1|6, 4U6F|1|6, 4V7R|1|A1, 4V8Y|1|B2, 5FCI|1|2, 5FCJ|1|2, 3J6X|1|1S, 3J77|1|1S, 4U3N|1|2, 4U4N|1|2, 4U6F|1|2(0)
NR_all_03510.2NR_3.5_03510.32.78(38) 4U4Y|1|6, 4U4U|1|2, 5FCJ|1|6, 5FCI|1|2, 4U4Q|1|6, 4U4U|1|6, 4U4R|1|2, 5FCI|1|6, 4U4Y|1|2, 4U4R|1|6, 5FCJ|1|2, 4V88|1|A6, 4U51|1|6, 4U50|1|2, 4U50|1|6, 4U4Z|1|2, 4U51|1|2, 4U4Z|1|6, 4U53|1|2, 4U3N|1|6, 4U3M|1|2, 4U53|1|6, 4U52|1|2, 4U3M|1|6, 4U55|1|2, 4U52|1|6, 4U3N|1|2, 4U55|1|6, 4U6F|1|2, 4U4N|1|2, 4U6F|1|6, 4U56|1|2, 4U4N|1|6, 4U3U|1|2, 4V88|1|A2, 4U56|1|6, 4U4Q|1|2, 4U3U|1|6(11) 4V8Y|1|B2, 4V7R|1|A1, 3J77|1|1S, 3J6X|1|1S, 4V6I|1|CA, 4U4O|1|2, 4V8Z|1|B2, 4V7R|1|C1, 3J78|1|1S, 3J6Y|1|1S, 4U4O|1|6(2) 5DC3|1|2, 5DC3|1|6
NR_all_03510.2NR_4.0_03510.32.78(42) 4V88|1|A6, 4U6F|1|2, 5FCI|1|2, 4U6F|1|6, 4U3M|1|2, 4V7R|1|A1, 5FCI|1|6, 4U3M|1|6, 5FCJ|1|2, 4V7R|1|C1, 4U3N|1|2, 4V88|1|A2, 4U56|1|6, 4U4O|1|2, 4U3N|1|6, 4U3U|1|2, 4U4O|1|6, 4U4Q|1|2, 4U3U|1|6, 4U4N|1|2, 4U4Q|1|6, 4U4R|1|2, 4U4N|1|6, 5FCJ|1|6, 4U4Y|1|6, 4U4Z|1|2, 4U4R|1|6, 4U4U|1|2, 4U4Z|1|6, 4U50|1|2, 4U4U|1|6, 4U4Y|1|2, 4U50|1|6, 4U53|1|6, 4U51|1|2, 4U55|1|2, 4U51|1|6, 4U52|1|2, 4U55|1|6, 4U56|1|2, 4U52|1|6, 4U53|1|2(7) 3J78|1|1S, 4V8Y|1|B2, 3J6X|1|1S, 3J77|1|1S, 4V6I|1|CA, 4V8Z|1|B2, 3J6Y|1|1S(2) 5DC3|1|2, 5DC3|1|6
NR_all_03510.2NR_all_03510.32.78(49) 4U56|1|2, 3J6X|1|1S, 4U6F|1|2, 3J77|1|1S, 4V6I|1|CA, 4U3M|1|2, 4V7R|1|C1, 4U3N|1|2, 4V88|1|A6, 4U3U|1|2, 4V8Z|1|B2, 4U4N|1|2, 5FCI|1|6, 4U4O|1|2, 5FCJ|1|6, 4U4Q|1|2, 4U4R|1|2, 4U4U|1|2, 4U4Y|1|2, 4U4Z|1|2, 4U50|1|2, 4U51|1|2, 4U52|1|2, 4U53|1|2, 4U55|1|2, 4U55|1|6, 4U56|1|6, 3J6Y|1|1S, 4U6F|1|6, 3J78|1|1S, 4V7R|1|A1, 4U3M|1|6, 4V88|1|A2, 4U3N|1|6, 4V8Y|1|B2, 4U3U|1|6, 5FCI|1|2, 4U4N|1|6, 5FCJ|1|2, 4U4O|1|6, 4U4Q|1|6, 4U4R|1|6, 4U4U|1|6, 4U4Y|1|6, 4U4Z|1|6, 4U50|1|6, 4U51|1|6, 4U52|1|6, 4U53|1|6(0) (2) 5DC3|1|6, 5DC3|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U4O|1|6Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
24U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
34U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
44U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
54U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
64U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
74U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
84U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
94U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
104U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
115FCJ|1|6Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11796
125FCI|1|6Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41796
134U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
144U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
154U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
164U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
174U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
184U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
194U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
204V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
214V7R|1|C1Yeast 80S ribosome.X-RAY DIFFRACTION41789
224V7R|1|A1Yeast 80S ribosome.X-RAY DIFFRACTION41789
234U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
244U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
254U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
264U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
274U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
284U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
294U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
304U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
314V8Z|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.61768
324V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
334V8Y|1|B2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.31768
344U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
354U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
364U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
374U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
384U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
394U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
404U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
414U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
425FCJ|1|2Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11782
435FCI|1|2Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41782
444U4O|1|2Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
453J6Y|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.11781
463J6X|1|1SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.11781
473J77|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.21781
483J78|1|1SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.31781
494V6I|1|CALocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.81721