Equivalence class NR_all_03510.2 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | 18S rRNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 2 | 4U4R|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 3 | 4U50|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 4 | 4U4Q|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 5 | 4U3U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 6 | 4U52|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 7 | 4U4U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 8 | 4V88|1|A2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 9 | 4V8Z|1|B2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 2014-07-09 |
| 10 | 4V8Y|1|B2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 2014-07-09 |
| 11 | 4U4R|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 12 | 5FCJ|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 2016-05-11 |
| 13 | 4U3U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 14 | 5FCI|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 2016-05-11 |
| 15 | 4U3N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 16 | 4U4N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 17 | 4U55|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 18 | 4U6F|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 19 | 4U4Y|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 20 | 4U53|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
| 21 | 4U4Q|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 22 | 4U4U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 23 | 4U4Z|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 24 | 4U4N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 25 | 4U52|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 26 | 4U3M|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 27 | 4U51|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 28 | 4U3M|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 29 | 4U55|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 30 | 4U51|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 31 | 4U4Z|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 32 | 4U3N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 33 | 4U50|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 34 | 4U56|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
| 35 | 4U4Y|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 36 | 4U53|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
| 37 | 4U6F|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 38 | 5FCJ|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 2016-05-11 |
| 39 | 5FCI|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 2016-05-11 |
| 40 | 4U56|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
| 41 | 3J6Y|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 2014-06-11 |
| 42 | 4U4O|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 2014-10-22 |
| 43 | 3J78|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 2014-08-06 |
| 44 | 3J77|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 2014-08-06 |
| 45 | 3J6X|1|1S | 18S ribosomal RNA | Saccharomyces cerevisiae | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 2014-06-11 |
| 46 | 4U4O|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 2014-10-22 |
| 47 | 4V7R|1|C1 | 18S ribosomal RNA | Saccharomyces cerevisiae | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 2014-07-09 |
| 48 | 4V7R|1|A1 | 18S ribosomal RNA | Saccharomyces cerevisiae | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 2014-07-09 |
| 49 | 4V6I|1|CA | 18S rRNA | Saccharomyces cerevisiae | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 2014-07-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_03510.2 | NR_all_03510.1 | 2.75 | (45) 4V6I|1|CA, 4U4Z|1|2, 4U3N|1|2, 4U53|1|2, 4U4Q|1|2, 4U6F|1|6, 4U4Y|1|6, 4U3M|1|6, 4U52|1|6, 4U4O|1|6, 4V8Z|1|B2, 4U6F|1|2, 4U4Y|1|2, 4U3M|1|2, 4U52|1|2, 4U4O|1|2, 4V8Y|1|B2, 4U4U|1|6, 3J78|1|1S, 4U51|1|6, 4U4N|1|6, 4U56|1|6, 4V88|1|A6, 4U4U|1|2, 3J77|1|1S, 4U51|1|2, 4U4N|1|2, 4U56|1|2, 4U4R|1|6, 4V88|1|A2, 3J6Y|1|1S, 4U50|1|6, 4U3U|1|6, 4U55|1|6, 4U4R|1|2, 4V7R|1|C1, 3J6X|1|1S, 4U50|1|2, 4U3U|1|2, 4U55|1|2, 4U4Q|1|6, 4V7R|1|A1, 4U4Z|1|6, 4U3N|1|6, 4U53|1|6 | (4) 5FCI|1|2, 5FCJ|1|6, 5FCJ|1|2, 5FCI|1|6 | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4U4O|1|6 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1791 |
| 2 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 |
| 3 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 4 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 5 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 6 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 7 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 8 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
| 9 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
| 10 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 11 | 5FCJ|1|6 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 1796 |
| 12 | 5FCI|1|6 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 1796 |
| 13 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 14 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 15 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 |
| 16 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 17 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 18 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 19 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 20 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
| 21 | 4V7R|1|C1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 |
| 22 | 4V7R|1|A1 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 1789 |
| 23 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 |
| 24 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
| 25 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
| 26 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 27 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 28 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 29 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
| 30 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
| 31 | 4V8Z|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 1768 |
| 32 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
| 33 | 4V8Y|1|B2 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 1768 |
| 34 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
| 35 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 36 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 37 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 38 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 39 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 40 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 41 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 |
| 42 | 5FCJ|1|2 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 1782 |
| 43 | 5FCI|1|2 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 1782 |
| 44 | 4U4O|1|2 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 1750 |
| 45 | 3J6Y|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 1781 |
| 46 | 3J6X|1|1S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 1781 |
| 47 | 3J77|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 1781 |
| 48 | 3J78|1|1S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 1781 |
| 49 | 4V6I|1|CA | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 1721 |