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Equivalence class NR_all_04576.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18EVP|1|EC (rep)Internal ribosome entry siteTaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.382023-09-06
28EWC|1|ECinternal ribosome entry site (IRES)Taura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.452023-09-06
38EUB|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.522023-09-06
48EVQ|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.722023-09-06
58EVR|1|ECTSV IRESTaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.872023-09-06
65JUP|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
78EWB|1|ECTaura syndrome virus (TSV) internal ribosome entry site (IRES) RNATaura syndrome virusHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.872023-09-06
85JUU|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
95JUO|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
105JUT|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
115JUS|1|ECIRESTaura syndrome virusSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)Electron microscopy4.22016-10-05
123J6X|1|IRTSV IRES mRNATaura syndrome virusS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.12014-06-11
133J6Y|1|IRTSV IRES mRNATaura syndrome virusS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.12014-06-11

Release history

Release3.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.359
Date2023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_04576.1NR_all_99969.13.299(7) 3J6X|1|IR, 3J6Y|1|IR, 5JUO|1|EC, 5JUP|1|EC, 5JUS|1|EC, 5JUT|1|EC, 5JUU|1|EC(6) 8EUB|1|EC, 8EVP|1|EC, 8EVQ|1|EC, 8EVR|1|EC, 8EWB|1|EC, 8EWC|1|EC(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15JUS|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.2198
25JUT|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4198
35JUO|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4198
45JUP|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5198
58EVR|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.87195
68EUB|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.52195
78EVQ|1|ECHypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.72200
88EWB|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.87153
98EVP|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38192
108EWC|1|ECHypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45192
115JUU|1|ECSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4198
123J6Y|1|IRS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.1198
133J6X|1|IRS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.1198

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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