Equivalence class NR_all_04852.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2PJP|1|B (rep) | SECIS RNA | Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA | X-ray diffraction | 2.3 | 2007-10-30 | ||||
| 2 | 2PLY|1|C | RNA (5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3') | Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | X-ray diffraction | 2.6 | 2007-11-06 | ||||
| 3 | 2UWM|1|D | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP *GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3' | Moorella thermoacetica | C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | X-ray diffraction | 2.31 | 2007-05-08 | |||
| 4 | 2PLY|1|E | RNA (5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3') | Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | X-ray diffraction | 2.6 | 2007-11-06 | ||||
| 5 | 1WSU|1|E | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*U*GP*GP*CP*AP*AP*CP*GP*CP*C)-3' | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-ray diffraction | 2.3 | 2005-01-25 | ||||
| 6 | 1WSU|1|F | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*U*GP*GP*CP*AP*AP*CP*GP*CP*C)-3' | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-ray diffraction | 2.3 | 2005-01-25 | ||||
| 7 | 1MFK|1|A | 5'-R(P*GP*GP*CP*GP*GP*UP*UP*GP*CP*AP*GP*GP*UP*CP*UP*GP*CP*AP*CP*CP*GP*CP*C)-3' | Structure of Prokaryotic SECIS mRNA Hairpin | Solution NMR | 2002-11-13 | |||||
| 8 | 2UWM|1|C | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP *GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3' | Moorella thermoacetica | C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | X-ray diffraction | 2.31 | 2007-05-08 | |||
| 9 | 1WSU|1|G | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*U*GP*GP*CP*AP*AP*CP*GP*CP*C)-3' | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-ray diffraction | 2.3 | 2005-01-25 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_04852.1 | NR_all_04852.2 | 2.93 | (7) 1WSU|1|E, 1WSU|1|F, 1WSU|1|G, 2PLY|1|C, 2PLY|1|E, 2UWM|1|C, 2UWM|1|D | (2) 1MFK|1|A, 2PJP|1|B | (0) |
| NR_all_04852.1 | NR_all_57169.1 | 2.93 | (1) 1MFK|1|A | (8) 1WSU|1|E, 1WSU|1|F, 1WSU|1|G, 2PJP|1|B, 2PLY|1|C, 2PLY|1|E, 2UWM|1|C, 2UWM|1|D | (0) |
| NR_all_04852.1 | NR_all_68957.1 | 2.93 | (1) 2PJP|1|B | (8) 1MFK|1|A, 1WSU|1|E, 1WSU|1|F, 1WSU|1|G, 2PLY|1|C, 2PLY|1|E, 2UWM|1|C, 2UWM|1|D | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2PLY|1|C | Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | X-RAY DIFFRACTION | 2.6 | 23 | |
| 2 | 2UWM|1|D | C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | X-RAY DIFFRACTION | 2.31 | 23 | |
| 3 | 1WSU|1|G | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-RAY DIFFRACTION | 2.3 | 21 | |
| 4 | 2PLY|1|E | Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | X-RAY DIFFRACTION | 2.6 | 23 | |
| 5 | 2UWM|1|C | C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | X-RAY DIFFRACTION | 2.31 | 23 | |
| 6 | 1WSU|1|F | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-RAY DIFFRACTION | 2.3 | 22 | |
| 7 | 1WSU|1|E | C-terminal domain of elongation factor selB complexed with SECIS RNA | X-RAY DIFFRACTION | 2.3 | 22 | |
| 8 | 1MFK|1|A | Structure of Prokaryotic SECIS mRNA Hairpin | SOLUTION NMR | 23 | ||
| 9 | 2PJP|1|B | Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA | X-RAY DIFFRACTION | 2.3 | 23 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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