Equivalence class NR_all_04974.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4U3L|1|A+ 4U3L|1|B (rep) | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | octameric RNA duplex co-crystallized in calcium(II)chloride | X-ray diffraction | 1.48 | 2015-07-29 | |||
| 2 | 4U3R|1|A+ 4U3R|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Octameric RNA duplex co-crystallized with cobalt(II)chloride | X-ray diffraction | 1.7 | 2015-07-29 | |||
| 3 | 4U47|1|A+ 4U47|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Octameric RNA duplex soaked in terbium(III)chloride | X-ray diffraction | 1.95 | 2015-08-05 | |||
| 4 | 4U3O|1|A+ 4U3O|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Octameric RNA duplex soaked in manganese(II)chloride | X-ray diffraction | 1.8 | 2015-07-29 | |||
| 5 | 4U3P|1|A+ 4U3P|1|B | RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3') | synthetic construct | Octameric RNA duplex co-crystallized with strontium(II)chloride | X-ray diffraction | 1.87 | 2015-07-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_04974.2 | NR_all_04974.1 | 2.35 | (4) 4U3L|1|A+4U3L|1|B, 4U3R|1|A+4U3R|1|B, 4U3P|1|A+4U3P|1|B, 4U3O|1|A+4U3O|1|B | (1) 4U47|1|A+4U47|1|B | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4U3R|1|A+4U3R|1|B | Octameric RNA duplex co-crystallized with cobalt(II)chloride | X-RAY DIFFRACTION | 1.7 | 8 |
| 2 | 4U3O|1|A+4U3O|1|B | Octameric RNA duplex soaked in manganese(II)chloride | X-RAY DIFFRACTION | 1.8 | 8 |
| 3 | 4U3P|1|A+4U3P|1|B | Octameric RNA duplex co-crystallized with strontium(II)chloride | X-RAY DIFFRACTION | 1.87 | 8 |
| 4 | 4U47|1|A+4U47|1|B | Octameric RNA duplex soaked in terbium(III)chloride | X-RAY DIFFRACTION | 1.95 | 8 |
| 5 | 4U3L|1|A+4U3L|1|B | octameric RNA duplex co-crystallized in calcium(II)chloride | X-RAY DIFFRACTION | 1.48 | 8 |
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