Equivalence class NR_all_06181.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7P6Z|1|3 (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | Mycoplasma pneumoniae 70S ribosome in untreated cells | Electron microscopy | 3.5 | 2022-05-25 |
| 2 | 7OOD|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | Electron microscopy | 3.4 | 2022-05-25 |
| 3 | 7PAL|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 4.7 | 2022-05-25 |
| 4 | 7PIB|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 4.7 | 2022-05-25 |
| 5 | 7PHB|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 4.9 | 2022-05-25 |
| 6 | 7PAK|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 5.3 | 2022-05-25 |
| 7 | 7PIT|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 5.7 | 2022-05-25 |
| 8 | 7PI9|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 6.3 | 2022-05-25 |
| 9 | 7PAI|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 6.7 | 2022-05-25 |
| 10 | 7PAM|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 6.8 | 2022-05-25 |
| 11 | 7PAO|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 7 | 2022-05-25 |
| 12 | 7PAJ|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 7.3 | 2022-05-25 |
| 13 | 7PAR|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 8.2 | 2022-05-25 |
| 14 | 7PHA|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.5 | 2022-05-25 |
| 15 | 7PAU|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | Electron microscopy | 8.3 | 2022-05-25 |
| 16 | 7PH9|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.7 | 2022-05-25 |
| 17 | 7PAQ|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 8.9 | 2022-05-25 |
| 18 | 7PI8|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.9 | 2022-05-25 |
| 19 | 7PIC|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.1 | 2022-05-25 |
| 20 | 7PIP|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.3 | 2022-05-25 |
| 21 | 7PAH|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 9.5 | 2022-05-25 |
| 22 | 7PIO|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.5 | 2022-05-25 |
| 23 | 7PAT|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | free 50S in untreated Mycoplasma pneumoniae cells | Electron microscopy | 9.2 | 2022-05-25 |
| 24 | 7PIQ|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.7 | 2022-05-25 |
| 25 | 7PAN|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 9.7 | 2022-05-25 |
| 26 | 7PHC|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.9 | 2022-05-25 |
| 27 | 7PIR|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 12.1 | 2022-05-25 |
| 28 | 7PIA|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 13.6 | 2022-05-25 |
| 29 | 7PIS|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 15 | 2022-05-25 |
| 30 | 7PAS|1|3 | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF02541 | 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 16 | 2022-05-25 |
Release history
| Release | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7PAK|1|3 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 5.3 | 2878 |
| 2 | 7PHB|1|3 | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.9 | 2878 |
| 3 | 7PAL|1|3 | 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.7 | 2878 |
| 4 | 7OOD|1|3 | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | ELECTRON MICROSCOPY | 3.4 | 2879 |
| 5 | 7P6Z|1|3 | Mycoplasma pneumoniae 70S ribosome in untreated cells | ELECTRON MICROSCOPY | 3.5 | 2879 |
| 6 | 7PAI|1|3 | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.7 | 2878 |
| 7 | 7PI9|1|3 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.3 | 2878 |
| 8 | 7PAJ|1|3 | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 7.3 | 2878 |
| 9 | 7PIP|1|3 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.3 | 2878 |
| 10 | 7PHA|1|3 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.5 | 2878 |
| 11 | 7PH9|1|3 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.7 | 2878 |
| 12 | 7PAH|1|3 | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.5 | 2878 |
| 13 | 7PIO|1|3 | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.5 | 2878 |
| 14 | 7PIQ|1|3 | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.7 | 2878 |
| 15 | 7PI8|1|3 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.9 | 2878 |
| 16 | 7PAT|1|3 | free 50S in untreated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.2 | 2878 |
| 17 | 7PAU|1|3 | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.3 | 2878 |
| 18 | 7PAR|1|3 | 70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.2 | 2878 |
| 19 | 7PIC|1|3 | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.1 | 2878 |
| 20 | 7PAN|1|3 | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.7 | 2878 |
| 21 | 7PAQ|1|3 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.9 | 2878 |
| 22 | 7PIB|1|3 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.7 | 2878 |
| 23 | 7PIT|1|3 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 5.7 | 2878 |
| 24 | 7PAO|1|3 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 7 | 2878 |
| 25 | 7PAM|1|3 | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.8 | 2878 |
| 26 | 7PHC|1|3 | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.9 | 2878 |
| 27 | 7PIR|1|3 | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 12.1 | 2878 |
| 28 | 7PIS|1|3 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 15 | 2878 |
| 29 | 7PIA|1|3 | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 13.6 | 2878 |
| 30 | 7PAS|1|3 | 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 16 | 2878 |