Equivalence class NR_all_06650.6 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6D9J|1|5+ 6D9J|1|8 (rep) | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 2018-06-06 |
| 2 | 3J71|1|5+ 3J71|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 2014-06-18 | |
| 3 | 3J72|1|5+ 3J72|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.4 | 2014-06-18 | |
| 4 | 5LZS|1|5+ 5LZS|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 2016-11-30 |
| 5 | 3J74|1|5+ 3J74|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 2014-06-18 | |
| 6 | 5LZV|1|5+ 5LZV|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 2016-11-30 |
| 7 | 6D90|1|5+ 6D90|1|8 | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 2018-06-06 |
| 8 | 5LZZ|1|5+ 5LZZ|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 2016-11-30 |
| 9 | 5LZW|1|5+ 5LZW|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 2016-11-30 |
| 10 | 5LZX|1|5+ 5LZX|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 2016-11-30 |
| 11 | 5LZT|1|5+ 5LZT|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 2016-11-30 |
| 12 | 3J73|1|5+ 3J73|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 2014-06-18 | |
| 13 | 6HCJ|1|51+ 6HCJ|1|81 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 2018-10-17 |
| 14 | 5LZU|1|5+ 5LZU|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 2016-11-30 |
| 15 | 6FRK|1|5+ 6FRK|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 2018-03-28 |
| 16 | 6HCF|1|52+ 6HCF|1|82 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 2018-10-17 |
| 17 | 5LZY|1|5+ 5LZY|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 2016-11-30 |
| 18 | 3JAH|1|5+ 3JAH|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 2015-08-12 |
| 19 | 6FTI|1|u+ 6FTI|1|w | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 2018-03-21 |
| 20 | 3JAG|1|5+ 3JAG|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 21 | 3JAI|1|5+ 3JAI|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 22 | 3J92|1|5+ 3J92|1|8 | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 2015-01-21 |
| 23 | 6FTJ|1|u+ 6FTJ|1|w | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.7 | 2018-03-21 |
| 24 | 1VWW|1|5+ 1VWW|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 2014-06-18 | |
| 25 | 1VWY|1|5+ 1VWY|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 2014-06-18 | |
| 26 | 1VX3|1|5+ 1VX3|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.5 | 2014-06-18 | |
| 27 | 6HCQ|1|51+ 6HCQ|1|81 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 2018-10-17 |
| 28 | 1VX0|1|5+ 1VX0|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.9 | 2014-06-18 | |
| 29 | 6HCM|1|52+ 6HCM|1|82 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 2018-10-17 |
| 30 | 4UJE|1|A2+ 4UJE|1|A3 | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 2014-07-16 |
| 31 | 6FTG|1|u+ 6FTG|1|w | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | ELECTRON MICROSCOPY | 9.1 | 2018-03-21 |
| 32 | 3JAN|1|5+ 3JAN|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 33 | 3JAJ|1|5+ 3JAJ|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 34 | 4UJD|1|A2+ 4UJD|1|A3 | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 2014-07-30 |
| 35 | 4D5Y|1|2+ 4D5Y|1|3 | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 36 | 4D67|1|2+ 4D67|1|3 | 28S RRNA, 5.8S RRNA | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 37 | 4UJC|1|A2+ 4UJC|1|A3 | 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 2014-07-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_06650.6 | NR_all_06650.5 | 3.44 | (33) 4UJC|1|A2+4UJC|1|A3, 1VWW|1|5+1VWW|1|8, 5LZX|1|5+5LZX|1|8, 3J92|1|5+3J92|1|8, 6FTJ|1|u+6FTJ|1|w, 4D67|1|2+4D67|1|3, 5LZW|1|5+5LZW|1|8, 3J74|1|5+3J74|1|8, 6FTI|1|u+6FTI|1|w, 4D5Y|1|2+4D5Y|1|3, 5LZV|1|5+5LZV|1|8, 3J73|1|5+3J73|1|8, 6FTG|1|u+6FTG|1|w, 3JAN|1|5+3JAN|1|8, 5LZU|1|5+5LZU|1|8, 3J72|1|5+3J72|1|8, 6FRK|1|5+6FRK|1|8, 3JAJ|1|5+3JAJ|1|8, 5LZT|1|5+5LZT|1|8, 3J71|1|5+3J71|1|8, 6D9J|1|5+6D9J|1|8, 5LZS|1|5+5LZS|1|8, 1VX3|1|5+1VX3|1|8, 6D90|1|5+6D90|1|8, 3JAI|1|5+3JAI|1|8, 4UJE|1|A2+4UJE|1|A3, 1VX0|1|5+1VX0|1|8, 5LZZ|1|5+5LZZ|1|8, 3JAH|1|5+3JAH|1|8, 4UJD|1|A2+4UJD|1|A3, 1VWY|1|5+1VWY|1|8, 5LZY|1|5+5LZY|1|8, 3JAG|1|5+3JAG|1|8 | (4) 6HCF|1|52+6HCF|1|82, 6HCQ|1|51+6HCQ|1|81, 6HCM|1|52+6HCM|1|82, 6HCJ|1|51+6HCJ|1|81 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_06650.6 | NR_all_06650.7 | 3.49 | (37) 1VWY|1|5+1VWY|1|8, 5LZY|1|5+5LZY|1|8, 3J72|1|5+3J72|1|8, 6FRK|1|5+6FRK|1|8, 3JAG|1|5+3JAG|1|8, 6HCF|1|52+6HCF|1|82, 3JAN|1|5+3JAN|1|8, 4UJD|1|A2+4UJD|1|A3, 5LZU|1|5+5LZU|1|8, 5LZX|1|5+5LZX|1|8, 3J71|1|5+3J71|1|8, 6D9J|1|5+6D9J|1|8, 3J92|1|5+3J92|1|8, 6FTJ|1|u+6FTJ|1|w, 3JAJ|1|5+3JAJ|1|8, 6HCQ|1|51+6HCQ|1|81, 4UJC|1|A2+4UJC|1|A3, 5LZT|1|5+5LZT|1|8, 1VWW|1|5+1VWW|1|8, 5LZW|1|5+5LZW|1|8, 1VX3|1|5+1VX3|1|8, 6D90|1|5+6D90|1|8, 3J74|1|5+3J74|1|8, 6FTI|1|u+6FTI|1|w, 3JAI|1|5+3JAI|1|8, 6HCM|1|52+6HCM|1|82, 4D67|1|2+4D67|1|3, 5LZS|1|5+5LZS|1|8, 1VX0|1|5+1VX0|1|8, 5LZZ|1|5+5LZZ|1|8, 3J73|1|5+3J73|1|8, 6FTG|1|u+6FTG|1|w, 3JAH|1|5+3JAH|1|8, 6HCJ|1|51+6HCJ|1|81, 4D5Y|1|2+4D5Y|1|3, 4UJE|1|A2+4UJE|1|A3, 5LZV|1|5+5LZV|1|8 | (0) | (4) 6MTC|1|5+6MTC|1|8, 6MTB|1|5+6MTB|1|8, 6MTE|1|5+6MTE|1|8, 6MTD|1|5+6MTD|1|8 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6HCJ|1|51+6HCJ|1|81 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 3635 |
| 2 | 6HCQ|1|51+6HCQ|1|81 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 3635 |
| 3 | 5LZY|1|5+5LZY|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 3543 |
| 4 | 5LZZ|1|5+5LZZ|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 3543 |
| 5 | 5LZX|1|5+5LZX|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 3543 |
| 6 | 5LZW|1|5+5LZW|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 3543 |
| 7 | 5LZT|1|5+5LZT|1|8 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 3543 |
| 8 | 5LZS|1|5+5LZS|1|8 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 3543 |
| 9 | 5LZU|1|5+5LZU|1|8 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 3543 |
| 10 | 5LZV|1|5+5LZV|1|8 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 3543 |
| 11 | 6HCF|1|52+6HCF|1|82 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 3634 |
| 12 | 6HCM|1|52+6HCM|1|82 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 3634 |
| 13 | 6D90|1|5+6D90|1|8 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 3594 |
| 14 | 6D9J|1|5+6D9J|1|8 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 3594 |
| 15 | 1VX3|1|5+1VX3|1|8 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.5 | 3662 |
| 16 | 3J74|1|5+3J74|1|8 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 3662 |
| 17 | 3J71|1|5+3J71|1|8 | Structure of the mammalian 60S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 18 | 1VWW|1|5+1VWW|1|8 | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 19 | 3J72|1|5+3J72|1|8 | Structure of the idle mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 20 | 1VWY|1|5+1VWY|1|8 | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 21 | 1VX0|1|5+1VX0|1|8 | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.9 | 3720 |
| 22 | 3J73|1|5+3J73|1|8 | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 3720 |
| 23 | 3J92|1|5+3J92|1|8 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 3662 |
| 24 | 3JAJ|1|5+3JAJ|1|8 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 3658 |
| 25 | 3JAN|1|5+3JAN|1|8 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 3658 |
| 26 | 6FRK|1|5+6FRK|1|8 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 3658 |
| 27 | 3JAI|1|5+3JAI|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 3662 |
| 28 | 3JAG|1|5+3JAG|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 3662 |
| 29 | 3JAH|1|5+3JAH|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 3662 |
| 30 | 6FTG|1|u+6FTG|1|w | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | ELECTRON MICROSCOPY | 9.1 | 3662 |
| 31 | 6FTJ|1|u+6FTJ|1|w | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.7 | 3662 |
| 32 | 6FTI|1|u+6FTI|1|w | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 3662 |
| 33 | 4UJC|1|A2+4UJC|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 3616 |
| 34 | 4UJE|1|A2+4UJE|1|A3 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 3616 |
| 35 | 4UJD|1|A2+4UJD|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 3616 |
| 36 | 4D67|1|2+4D67|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |
| 37 | 4D5Y|1|2+4D5Y|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |