#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V49|1|AW (rep)tRNA-Phe, mRNAEscherichia coliCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.72014-07-09
24V49|1|AVtRNA-Phe, mRNAEscherichia coliCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.72014-07-09
31ZO3|1|AtRNAEscherichia coliThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.82005-06-14
41ZO3|1|BtRNAEscherichia coliThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.82005-06-14
51ZO1|1|FP/I-site tRNAEscherichia coliIF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.82005-06-14
64V65|1|AEA/T, P and E-site tRNAsEscherichia coliStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92014-07-09
73WC2|1|P76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
84V65|1|AAA/T, P and E-site tRNAs, mRNA modelEscherichia coliStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92014-07-09
93DEG|1|AA/L-tRNAEscherichia coliComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.92008-08-19
104V42|1|ABTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.52014-07-09
111JGP|1|BtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION72001-07-20
121JGQ|1|BtRNA(Phe)The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION52001-07-20
131JGO|1|BtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.62001-07-20
141MJ1|1|DPhe-tRNAEscherichia coliFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY132002-11-01
151TTT|1|FTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
164V4T|1|AWE-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.462014-07-09
174V4R|1|AWE-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.92014-07-09
184V4S|1|AWE-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.762014-07-09
194V4W|1|AUtRNAEscherichia coliStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152014-07-09
204V4V|1|AUtRNAEscherichia coliStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152014-07-09
214V4V|1|AVtRNAEscherichia coliStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152014-07-09
224V4W|1|AWtRNAEscherichia coliStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152014-07-09
234V4V|1|AWtRNAEscherichia coliStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152014-07-09
244V69|1|AYA/T-site tRNA Phe, mRNATernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72014-07-09
251EVV|1|APHENYLALANINE TRANSFER RNASaccharomycesCRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION22000-05-01
264V42|1|ACTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.52014-07-09
271ML5|1|BT-RNA(PHE), A- AND P-SITE MESSENGER RNA CODONSEscherichia coliStructure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY142003-01-14
281MJ1|1|CPhe-tRNAEscherichia coliFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY132002-11-01
291JGP|1|CtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION72001-07-20
301JGQ|1|CtRNA(Phe), MESSENGER RNA MF36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION52001-07-20
311JGO|1|CtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.62001-07-20
321SZ1|1|ET-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.212004-08-10
331TTT|1|ETRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
341SZ1|1|FT-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.212004-08-10
354V66|1|AAA/T, P and E-site tRNAs, mRNA modelEscherichia coliStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92014-07-09
364V4W|1|AVtRNAEscherichia coliStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152014-07-09
373WC2|1|Q76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
384V66|1|APA/T, P and E-site tRNAs, mRNA modelEscherichia coliStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92014-07-09
391TTT|1|DTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
404V66|1|AEA/T, P and E-site tRNAsEscherichia coliStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92014-07-09
414V65|1|APA/T, P and E-site tRNAs, mRNA modelEscherichia coliStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92014-07-09
424V4S|1|AVP-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.762014-07-09
434V4T|1|AVP-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.462014-07-09
444V4R|1|AVP-site tRNA (Phe)Escherichia coliCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.92014-07-09
454V48|1|A6tRNA-PHEEscherichia coliReal space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52014-07-09
461QZB|1|BPhe-tRNACoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY92003-11-04
471QZA|1|BPhe-tRNACoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY102003-11-04
483EP2|1|YtRNAEscherichia coliModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16
493EQ3|1|YtRNAEscherichia coliModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.119
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13DEG|1|AComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.962
23WC2|1|PCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
33WC2|1|QCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
44V4R|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
54V4S|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
64V4T|1|AVCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
74V49|1|AVCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
81MJ1|1|CFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
91JGQ|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
104V42|1|ACCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
111JGP|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
121JGO|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
131ML5|1|BStructure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1462
144V42|1|ABCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
151JGP|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
161JGQ|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
171JGO|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
184V49|1|AWCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
191SZ1|1|FMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
201SZ1|1|EMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
214V66|1|AAStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
221ZO3|1|BThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
231ZO3|1|AThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
241ZO1|1|FIF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
251MJ1|1|DFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1362
264V4V|1|AWStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
274V4V|1|AVStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
284V4V|1|AUStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
294V4W|1|AUStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
304V4W|1|AVStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
314V4W|1|AWStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
321EVV|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
334V4S|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7673
344V4R|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.973
354V4T|1|AWCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4673
364V66|1|AEStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
374V65|1|AEStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
384V65|1|APStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
394V66|1|APStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
401TTT|1|DPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
411TTT|1|EPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
421TTT|1|FPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
434V69|1|AYTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
444V65|1|AAStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
451QZB|1|BCoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
464V48|1|A6Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.576
473EQ3|1|YModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
481QZA|1|BCoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075
493EP2|1|YModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974