Equivalence class NR_all_07733.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5EL4|1|3L (rep) | Transfer RNA | tRNA-Lys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
| 2 | 5E7K|1|3L | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
| 3 | 5EL6|1|3L | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
| 4 | 5E7K|1|3K | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
| 5 | 5EL6|1|3K | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
| 6 | 5EL5|1|3K | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 |
| 7 | 5EL5|1|3L | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 |
| 8 | 5EL7|1|3K | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 |
| 9 | 5EL4|1|3K | Transfer RNA | tRNA-Lys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
| 10 | 5EL7|1|3L | Transfer RNA | tRNALys | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_07733.1 | NR_20.0_07733.2 | 2.77 | (10) 5E7K|1|3K, 5E7K|1|3L, 5EL4|1|3K, 5EL4|1|3L, 5EL5|1|3K, 5EL5|1|3L, 5EL6|1|3K, 5EL6|1|3L, 5EL7|1|3K, 5EL7|1|3L | (0) | (4) 5IB8|1|3K, 5IB7|1|3L, 5IB7|1|3K, 5IB8|1|3L |
| NR_all_07733.1 | NR_3.5_07733.2 | 2.77 | (10) 5EL6|1|3L, 5EL7|1|3K, 5EL7|1|3L, 5E7K|1|3K, 5E7K|1|3L, 5EL4|1|3K, 5EL4|1|3L, 5EL5|1|3K, 5EL5|1|3L, 5EL6|1|3K | (0) | (4) 5IB8|1|3K, 5IB7|1|3L, 5IB7|1|3K, 5IB8|1|3L |
| NR_all_07733.1 | NR_4.0_07733.2 | 2.77 | (10) 5E7K|1|3K, 5E7K|1|3L, 5EL4|1|3K, 5EL4|1|3L, 5EL5|1|3K, 5EL5|1|3L, 5EL6|1|3K, 5EL6|1|3L, 5EL7|1|3K, 5EL7|1|3L | (0) | (4) 5IB8|1|3K, 5IB7|1|3L, 5IB7|1|3K, 5IB8|1|3L |
| NR_all_07733.1 | NR_all_07733.2 | 2.77 | (10) 5EL5|1|3K, 5EL5|1|3L, 5EL6|1|3K, 5EL6|1|3L, 5EL7|1|3K, 5EL7|1|3L, 5EL4|1|3L, 5E7K|1|3K, 5E7K|1|3L, 5EL4|1|3K | (0) | (4) 5IB8|1|3L, 5IB8|1|3K, 5IB7|1|3L, 5IB7|1|3K |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5EL5|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 75 |
| 2 | 5EL7|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 73 |
| 3 | 5EL6|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 75 |
| 4 | 5E7K|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 73 |
| 5 | 5EL4|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 73 |
| 6 | 5EL4|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 76 |
| 7 | 5E7K|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 76 |
| 8 | 5EL6|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 75 |
| 9 | 5EL7|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 75 |
| 10 | 5EL5|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 76 |