Equivalence class NR_all_09107.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1OKF|1|B (rep) | 5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3' | NMR structure of an alpha-L-LNA:RNA hybrid | Solution NMR | 2003-10-09 | |||||
| 2 | 1HG9|1|B | 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 | synthetic construct | Synthetic | Solution structure of DNA:RNA hybrid | Solution NMR | 2002-01-02 | |||
| 3 | 1HHX|1|B | 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 | Solution structure of LNA3:RNA hybrid | Solution NMR | 2002-05-30 | |||||
| 4 | 1H0Q|1|B | 5-R(*GP*CP*AP*UP*AP*UP*CP*AP*G)-3 | NMR solution structure of a fully modified locked nucleic acid (LNA) hybridized to RNA | Solution NMR | 2003-07-17 | |||||
| 5 | 1HHW|1|B | 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 | Solution structure of LNA1:RNA hybrid | Solution NMR | 2002-05-30 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_09107.1 | NR_all_00501.1 | 2.46 | (1) 1H0Q|1|B | (4) 1OKF|1|B, 1HHX|1|B, 1HHW|1|B, 1HG9|1|B | (0) |
| NR_all_09107.1 | NR_all_02299.1 | 2.46 | (1) 1HHW|1|B | (4) 1HHX|1|B, 1HG9|1|B, 1H0Q|1|B, 1OKF|1|B | (0) |
| NR_all_09107.1 | NR_all_03149.1 | 2.46 | (3) 1OKF|1|B, 1HHX|1|B, 1HG9|1|B | (2) 1HHW|1|B, 1H0Q|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_09107.1 | NR_all_15880.1 | 2.93 | (1) 1H0Q|1|B | (4) 1HG9|1|B, 1HHX|1|B, 1HHW|1|B, 1OKF|1|B | (0) |
| NR_all_09107.1 | NR_all_32272.1 | 2.93 | (3) 1HG9|1|B, 1HHX|1|B, 1OKF|1|B | (2) 1HHW|1|B, 1H0Q|1|B | (0) |
| NR_all_09107.1 | NR_all_40229.1 | 2.93 | (1) 1HHW|1|B | (4) 1HHX|1|B, 1HG9|1|B, 1OKF|1|B, 1H0Q|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1H0Q|1|B | NMR solution structure of a fully modified locked nucleic acid (LNA) hybridized to RNA | SOLUTION NMR | 9 | |
| 2 | 1HHX|1|B | Solution structure of LNA3:RNA hybrid | SOLUTION NMR | 9 | |
| 3 | 1HG9|1|B | Solution structure of DNA:RNA hybrid | SOLUTION NMR | 9 | |
| 4 | 1OKF|1|B | NMR structure of an alpha-L-LNA:RNA hybrid | SOLUTION NMR | 9 | |
| 5 | 1HHW|1|B | Solution structure of LNA1:RNA hybrid | SOLUTION NMR | 9 |