Equivalence class NR_all_10255.27 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Y|1|B7 (rep) | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 2 | 7OYD|1|K | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | Electron microscopy | 2.3 | 2022-07-20 |
| 3 | 7O7Z|1|B7 | 5S ribosomal RNA | 5S | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
| 4 | 7UCK|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | Electron microscopy | 2.8 | 2022-06-01 |
| 5 | 7OBR|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | RNC-SRP early complex | Electron microscopy | 2.8 | 2021-07-21 |
| 6 | 7QWQ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Ternary complex of ribosome nascent chain with SRP and NAC | Electron microscopy | 2.83 | 2022-03-16 |
| 7 | 7ZJW|1|L7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 2022-10-19 |
| 8 | 6SGC|1|74 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 2019-12-04 |
| 9 | 7QWR|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Electron microscopy | 2.9 | 2022-03-09 |
| 10 | 7O80|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 2021-06-02 |
| 11 | 7TOR|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
| 12 | 6R5Q|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 2019-07-10 |
| 13 | 7UCJ|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | Electron microscopy | 3.1 | 2022-06-01 |
| 14 | 6R6P|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | Electron microscopy | 3.1 | 2019-07-10 |
| 15 | 7NWI|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | Electron microscopy | 3.13 | 2021-07-07 |
| 16 | 7ZJX|1|L7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome programmed with SECIS and SBP2 | Electron microscopy | 3.1 | 2022-09-07 |
| 17 | 6P5K|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | Electron microscopy | 3.1 | 2019-09-18 |
| 18 | 7O81|1|B7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | Electron microscopy | 3.1 | 2021-06-02 |
| 19 | 7TOQ|1|A5S | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | Electron microscopy | 3.1 | 2022-05-25 |
| 20 | 6P5J|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | Electron microscopy | 3.1 | 2019-09-18 |
| 21 | 6P5I|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | Electron microscopy | 3.1 | 2019-09-18 |
| 22 | 6T59|1|74 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | Electron microscopy | 3.11 | 2019-11-27 |
| 23 | 7NFX|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Electron microscopy | 3.2 | 2021-06-02 |
| 24 | 6P5N|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | Electron microscopy | 3.2 | 2019-09-25 |
| 25 | 7MDZ|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | 80S rabbit ribosome stalled with benzamide-CHX | Electron microscopy | 3.2 | 2021-09-01 |
| 26 | 7TM3|1|u | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon | Electron microscopy | 3.25 | 2022-10-19 |
| 27 | 6D9J|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 28 | 5LZS|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 29 | 5LZV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 30 | 6MTD|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | Electron microscopy | 3.3 | 2018-11-21 |
| 31 | 7QWS|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | Electron microscopy | 3.4 | 2022-03-09 |
| 32 | 6ZVK|1|d2 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.49 | 2020-12-23 |
| 33 | 6MTE|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | Electron microscopy | 3.4 | 2018-11-21 |
| 34 | 5LZZ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 35 | 6MTC|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | Electron microscopy | 3.4 | 2018-11-21 |
| 36 | 5LZW|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 2016-11-30 |
| 37 | 6D90|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 38 | 7A01|1|d2 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.6 | 2020-12-30 |
| 39 | 5LZT|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 2016-11-30 |
| 40 | 5LZX|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 2016-11-30 |
| 41 | 6GZ5|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 2018-12-05 |
| 42 | 6MTB|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 2018-11-21 |
| 43 | 6GZ3|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 2018-12-05 |
| 44 | 6FRK|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron microscopy | 3.7 | 2018-03-28 |
| 45 | 5LZU|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 2016-11-30 |
| 46 | 6R6G|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | Electron microscopy | 3.7 | 2019-07-10 |
| 47 | 7NWG|1|71 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | Electron microscopy | 3.8 | 2021-07-07 |
| 48 | 6GZ4|1|A4 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 2018-12-05 |
| 49 | 6HCJ|1|71 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 2018-10-17 |
| 50 | 3JAH|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
| 51 | 7TUT|1|u | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon | Electron microscopy | 3.88 | 2022-10-19 |
| 52 | 6R7Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | Electron microscopy | 3.9 | 2019-07-10 |
| 53 | 3J92|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure and assembly pathway of the ribosome quality control complex | Electron microscopy | 3.6 | 2015-01-21 |
| 54 | 5LZY|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 2016-11-30 |
| 55 | 3JAG|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 56 | 7NWH|1|7 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. | Electron microscopy | 4.1 | 2021-07-07 |
| 57 | 3JAI|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 58 | 6HCF|1|72 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 2018-10-17 |
| 59 | 6FTI|1|v | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | Electron microscopy | 4.2 | 2018-03-21 |
| 60 | 6FTJ|1|v | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | Electron microscopy | 4.7 | 2018-03-21 |
| 61 | 6HCQ|1|71 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit collided di-ribosome (collided monosome) | Electron microscopy | 6.5 | 2018-10-17 |
| 62 | 6HCM|1|72 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the rabbit collided di-ribosome (stalled monosome) | Electron microscopy | 6.8 | 2018-10-17 |
| 63 | 4UJE|1|A4 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 64 | 3JAN|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 65 | 3JAJ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 66 | 6FTG|1|v | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | Electron microscopy | 9.1 | 2018-03-21 |
| 67 | 4UJD|1|A4 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 68 | 4D5Y|1|4 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 69 | 4D67|1|4 | 5S ribosomal RNA | 5S RRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 70 | 4UJC|1|A4 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_10255.27 | NR_all_10255.26 | 3.253 | (67) 6P5K|1|7, 5LZX|1|7, 7MDZ|1|7, 6GZ5|1|A4, 7QWR|1|7, 4D5Y|1|4, 6P5J|1|7, 7QWQ|1|7, 3JAN|1|7, 6GZ4|1|A4, 5LZW|1|7, 7A01|1|d2, 6P5I|1|7, 7OYD|1|K, 3JAJ|1|7, 6GZ3|1|A4, 5LZV|1|7, 6ZVK|1|d2, 7OBR|1|7, 3JAI|1|7, 6MTE|1|7, 6FTJ|1|v, 5LZU|1|7, 6T59|1|74, 7O81|1|B7, 3JAH|1|7, 6MTD|1|7, 6FTI|1|v, 7O80|1|B7, 7ZJX|1|L7, 5LZT|1|7, 6SGC|1|74, 3JAG|1|7, 6MTC|1|7, 6FTG|1|v, 7O7Z|1|B7, 7UCK|1|7, 5LZS|1|7, 6R7Q|1|7, 3J92|1|7, 6MTB|1|7, 6FRK|1|7, 7O7Y|1|B7, 4UJE|1|A4, 6R6P|1|7, 7UCJ|1|7, 6HCQ|1|71, 6D9J|1|7, 7NWI|1|7, 4UJD|1|A4, 6R6G|1|7, 7TOR|1|A5S, 6HCM|1|72, 6D90|1|7, 7NWH|1|7, 4UJC|1|A4, 6R5Q|1|7, 7TOQ|1|A5S, 6HCJ|1|71, 5LZZ|1|7, 7NWG|1|71, 6P5N|1|7, 7QWS|1|7, 4D67|1|4, 6HCF|1|72, 5LZY|1|7, 7NFX|1|7 | (3) 7TM3|1|u, 7ZJW|1|L7, 7TUT|1|u | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_10255.27 | NR_all_10255.28 | 3.271 | (70) 5LZV|1|7, 6HCM|1|72, 6ZVK|1|d2, 7TM3|1|u, 5LZU|1|7, 6HCJ|1|71, 6T59|1|74, 7QWS|1|7, 5LZT|1|7, 6HCF|1|72, 6SGC|1|74, 7QWR|1|7, 5LZS|1|7, 6GZ5|1|A4, 6R7Q|1|7, 7QWQ|1|7, 4UJE|1|A4, 6GZ4|1|A4, 6R6P|1|7, 7OYD|1|K, 4UJD|1|A4, 6GZ3|1|A4, 6R6G|1|7, 7OBR|1|7, 4UJC|1|A4, 6FTJ|1|v, 6R5Q|1|7, 7O81|1|B7, 4D67|1|4, 6FTI|1|v, 6P5N|1|7, 7O80|1|B7, 4D5Y|1|4, 6FTG|1|v, 6P5K|1|7, 7O7Z|1|B7, 7ZJX|1|L7, 3JAN|1|7, 6FRK|1|7, 6P5J|1|7, 7O7Y|1|B7, 7ZJW|1|L7, 3JAJ|1|7, 6D9J|1|7, 6P5I|1|7, 7NWI|1|7, 3JAI|1|7, 6D90|1|7, 6MTE|1|7, 7NWH|1|7, 7UCK|1|7, 3JAH|1|7, 5LZZ|1|7, 6MTD|1|7, 7NWG|1|71, 7UCJ|1|7, 3JAG|1|7, 5LZY|1|7, 6MTC|1|7, 7NFX|1|7, 7TUT|1|u, 3J92|1|7, 5LZX|1|7, 6MTB|1|7, 7MDZ|1|7, 7TOR|1|A5S, 5LZW|1|7, 6HCQ|1|71, 7A01|1|d2, 7TOQ|1|A5S | (0) | (1) 8B6C|1|7 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJE|1|A4 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 119 |
| 2 | 4UJD|1|A4 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 119 |
| 3 | 4UJC|1|A4 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 119 |
| 4 | 4D5Y|1|4 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 119 |
| 5 | 4D67|1|4 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 119 |
| 6 | 6ZVK|1|d2 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.49 | 120 |
| 7 | 7A01|1|d2 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.6 | 120 |
| 8 | 6GZ4|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 119 |
| 9 | 6GZ5|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 119 |
| 10 | 6GZ3|1|A4 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 119 |
| 11 | 7QWS|1|7 | Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC | ELECTRON MICROSCOPY | 3.4 | 120 |
| 12 | 7QWR|1|7 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | ELECTRON MICROSCOPY | 2.9 | 120 |
| 13 | 7QWQ|1|7 | Ternary complex of ribosome nascent chain with SRP and NAC | ELECTRON MICROSCOPY | 2.83 | 120 |
| 14 | 7OBR|1|7 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 120 |
| 15 | 7NFX|1|7 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | ELECTRON MICROSCOPY | 3.2 | 120 |
| 16 | 7TOQ|1|A5S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | ELECTRON MICROSCOPY | 3.1 | 120 |
| 17 | 6R6P|1|7 | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | ELECTRON MICROSCOPY | 3.1 | 120 |
| 18 | 6R6G|1|7 | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | ELECTRON MICROSCOPY | 3.7 | 120 |
| 19 | 6R5Q|1|7 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 120 |
| 20 | 7TOR|1|A5S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 120 |
| 21 | 7TUT|1|u | Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon | ELECTRON MICROSCOPY | 3.88 | 120 |
| 22 | 7TM3|1|u | Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon | ELECTRON MICROSCOPY | 3.25 | 120 |
| 23 | 6MTE|1|7 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 120 |
| 24 | 6MTD|1|7 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 120 |
| 25 | 6MTB|1|7 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 120 |
| 26 | 6MTC|1|7 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 120 |
| 27 | 7MDZ|1|7 | 80S rabbit ribosome stalled with benzamide-CHX | ELECTRON MICROSCOPY | 3.2 | 119 |
| 28 | 6R7Q|1|7 | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | ELECTRON MICROSCOPY | 3.9 | 120 |
| 29 | 5LZY|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 120 |
| 30 | 5LZZ|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 120 |
| 31 | 5LZX|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 120 |
| 32 | 5LZW|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 120 |
| 33 | 5LZT|1|7 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 120 |
| 34 | 5LZV|1|7 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 120 |
| 35 | 5LZU|1|7 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 120 |
| 36 | 5LZS|1|7 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 119 |
| 37 | 3JAH|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 120 |
| 38 | 6FTJ|1|v | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.7 | 120 |
| 39 | 6FTI|1|v | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 120 |
| 40 | 6FTG|1|v | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | ELECTRON MICROSCOPY | 9.1 | 120 |
| 41 | 3JAG|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 120 |
| 42 | 3JAI|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 120 |
| 43 | 3J92|1|7 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 120 |
| 44 | 3JAN|1|7 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 120 |
| 45 | 3JAJ|1|7 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 120 |
| 46 | 6FRK|1|7 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 120 |
| 47 | 6T59|1|74 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | ELECTRON MICROSCOPY | 3.11 | 120 |
| 48 | 6P5J|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | ELECTRON MICROSCOPY | 3.1 | 119 |
| 49 | 6P5I|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | ELECTRON MICROSCOPY | 3.1 | 119 |
| 50 | 7ZJX|1|L7 | Rabbit 80S ribosome programmed with SECIS and SBP2 | ELECTRON MICROSCOPY | 3.1 | 119 |
| 51 | 6P5K|1|7 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | ELECTRON MICROSCOPY | 3.1 | 119 |
| 52 | 7O81|1|B7 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | ELECTRON MICROSCOPY | 3.1 | 119 |
| 53 | 7O80|1|B7 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 119 |
| 54 | 7O7Y|1|B7 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 119 |
| 55 | 7O7Z|1|B7 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 119 |
| 56 | 6SGC|1|74 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 119 |
| 57 | 7ZJW|1|L7 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 119 |
| 58 | 7OYD|1|K | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | ELECTRON MICROSCOPY | 2.3 | 119 |
| 59 | 6P5N|1|7 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | ELECTRON MICROSCOPY | 3.2 | 119 |
| 60 | 7UCJ|1|7 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | ELECTRON MICROSCOPY | 3.1 | 120 |
| 61 | 7UCK|1|7 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | ELECTRON MICROSCOPY | 2.8 | 120 |
| 62 | 7NWI|1|7 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | ELECTRON MICROSCOPY | 3.13 | 120 |
| 63 | 6D90|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 |
| 64 | 7NWH|1|7 | Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. | ELECTRON MICROSCOPY | 4.1 | 120 |
| 65 | 6D9J|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 |
| 66 | 6HCF|1|72 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 120 |
| 67 | 6HCM|1|72 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 120 |
| 68 | 7NWG|1|71 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | ELECTRON MICROSCOPY | 3.8 | 120 |
| 69 | 6HCJ|1|71 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 120 |
| 70 | 6HCQ|1|71 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 120 |
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