NR_all_10255.29

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7O7Y\|1\|B7 (rep)	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	2021-06-02
2	7OYD\|1\|K	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	2022-07-20
3	7O7Z\|1\|B7	5S ribosomal RNA	5S	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	2021-06-02
4	8B6C\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	Electron microscopy	2.79	2023-02-22
5	7UCK\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	2022-06-01
6	7OBR\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	RNC-SRP early complex	Electron microscopy	2.8	2021-07-21
7	7QWQ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Ternary complex of ribosome nascent chain with SRP and NAC	Electron microscopy	2.83	2022-03-16
8	7ZJW\|1\|L7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome as it decodes the Sec-UGA codon	Electron microscopy	2.8	2022-10-19
9	8B5L\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	Electron microscopy	2.86	2023-03-01
10	6SGC\|1\|74	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	2019-12-04
11	7QWR\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	Electron microscopy	2.9	2022-03-09
12	7O80\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	2021-06-02
13	7TOR\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	2022-05-25
14	6R5Q\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	2019-07-10
15	7UCJ\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	2022-06-01
16	6R6P\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	2019-07-10
17	7NWI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	2021-07-07
18	7ZJX\|1\|L7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome programmed with SECIS and SBP2	Electron microscopy	3.1	2022-09-07
19	6P5K\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	2019-09-18
20	7O81\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	2021-06-02
21	7TOQ\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	2022-05-25
22	6P5J\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	2019-09-18
23	6P5I\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	2019-09-18
24	6T59\|1\|74	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	Electron microscopy	3.11	2019-11-27
25	7NFX\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	Electron microscopy	3.2	2021-06-02
26	6P5N\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	2019-09-25
27	7MDZ\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	2021-09-01
28	7TM3\|1\|u	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.25	2022-10-19
29	6D9J\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	2018-06-06
30	5LZS\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	2016-11-30
31	5LZV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	2016-11-30
32	6MTD\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	2018-11-21
33	7QWS\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	Electron microscopy	3.4	2022-03-09
34	6ZVK\|1\|d2	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	2020-12-23
35	6MTE\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	2018-11-21
36	5LZZ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	2016-11-30
37	6MTC\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	2018-11-21
38	5LZW\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	2016-11-30
39	6D90\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	2018-06-06
40	7A01\|1\|d2	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.6	2020-12-30
41	5LZT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	2016-11-30
42	5LZX\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	2016-11-30
43	6GZ5\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	2018-12-05
44	6MTB\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	2018-11-21
45	6GZ3\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	2018-12-05
46	6FRK\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	Electron microscopy	3.7	2018-03-28
47	5LZU\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	2016-11-30
48	6R6G\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	2019-07-10
49	7NWG\|1\|71	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	Electron microscopy	3.8	2021-07-07
50	6GZ4\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	2018-12-05
51	6HCJ\|1\|71	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	2018-10-17
52	3JAH\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	2015-08-12
53	7TUT\|1\|u	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.88	2022-10-19
54	6R7Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	2019-07-10
55	3J92\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure and assembly pathway of the ribosome quality control complex	Electron microscopy	3.6	2015-01-21
56	5LZY\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	2016-11-30
57	3JAG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	2015-08-12
58	7NWH\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	Electron microscopy	4.1	2021-07-07
59	3JAI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	2015-08-12
60	6HCF\|1\|72	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	2018-10-17
61	6FTI\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	Electron microscopy	4.2	2018-03-21
62	6FTJ\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	Electron microscopy	4.7	2018-03-21
63	6HCQ\|1\|71	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	2018-10-17
64	6HCM\|1\|72	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	2018-10-17
65	4UJE\|1\|A4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	2014-07-16
66	3JAN\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05
67	3JAJ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05
68	6FTG\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	Electron microscopy	9.1	2018-03-21
69	4UJD\|1\|A4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	2014-07-30
70	4D5Y\|1\|4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	2015-03-04
71	4D67\|1\|4	5S ribosomal RNA	5S RRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	2015-03-04
72	4UJC\|1\|A4	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	2014-07-30

Release history

Release	3.272	3.273	3.274	3.275	3.276	3.277	3.278	3.279	3.280	3.281	3.282	3.283
Date	2023-03-01	2023-03-08	2023-03-15	2023-03-22	2023-03-29	2023-04-05	2023-04-12	2023-04-19	2023-04-26	2023-05-03	2023-05-10	2023-05-17

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_10255.29	NR_all_10255.28	3.272	(71) 7NWI\|1\|7, 6D9J\|1\|7, 7NWH\|1\|7, 6D90\|1\|7, 7NWG\|1\|71, 5LZZ\|1\|7, 7NFX\|1\|7, 5LZY\|1\|7, 7MDZ\|1\|7, 5LZX\|1\|7, 7A01\|1\|d2, 5LZW\|1\|7, 6ZVK\|1\|d2, 5LZV\|1\|7, 6T59\|1\|74, 5LZU\|1\|7, 6SGC\|1\|74, 5LZT\|1\|7, 6R7Q\|1\|7, 5LZS\|1\|7, 6R6P\|1\|7, 4UJE\|1\|A4, 6R6G\|1\|7, 4UJD\|1\|A4, 6R5Q\|1\|7, 4UJC\|1\|A4, 6P5N\|1\|7, 4D67\|1\|4, 6P5K\|1\|7, 8B6C\|1\|7, 4D5Y\|1\|4, 6P5J\|1\|7, 7ZJX\|1\|L7, 3JAN\|1\|7, 6P5I\|1\|7, 7ZJW\|1\|L7, 3JAJ\|1\|7, 6MTE\|1\|7, 7UCK\|1\|7, 3JAI\|1\|7, 6MTD\|1\|7, 7UCJ\|1\|7, 3JAH\|1\|7, 6MTC\|1\|7, 7TUT\|1\|u, 3JAG\|1\|7, 6MTB\|1\|7, 7TOR\|1\|A5S, 3J92\|1\|7, 6HCQ\|1\|71, 7TOQ\|1\|A5S, 6HCM\|1\|72, 7TM3\|1\|u, 6HCJ\|1\|71, 7QWS\|1\|7, 6HCF\|1\|72, 7QWR\|1\|7, 6GZ5\|1\|A4, 7QWQ\|1\|7, 6GZ4\|1\|A4, 7OYD\|1\|K, 6GZ3\|1\|A4, 7OBR\|1\|7, 7O81\|1\|B7, 6FTJ\|1\|v, 7O80\|1\|B7, 6FTI\|1\|v, 7O7Z\|1\|B7, 6FTG\|1\|v, 7O7Y\|1\|B7, 6FRK\|1\|7	(1) 8B5L\|1\|7	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_10255.29	NR_all_10255.30	3.284	(72) 7ZJX\|1\|L7, 3JAN\|1\|7, 6FRK\|1\|7, 6P5J\|1\|7, 7O7Y\|1\|B7, 7ZJW\|1\|L7, 3JAJ\|1\|7, 6D9J\|1\|7, 6P5I\|1\|7, 7NWI\|1\|7, 7UCK\|1\|7, 3JAI\|1\|7, 6D90\|1\|7, 6MTE\|1\|7, 7NWH\|1\|7, 7UCJ\|1\|7, 3JAH\|1\|7, 5LZZ\|1\|7, 6MTD\|1\|7, 7NWG\|1\|71, 3JAG\|1\|7, 5LZY\|1\|7, 6MTC\|1\|7, 7NFX\|1\|7, 7TUT\|1\|u, 3J92\|1\|7, 5LZX\|1\|7, 6MTB\|1\|7, 7MDZ\|1\|7, 7TOR\|1\|A5S, 5LZW\|1\|7, 6HCQ\|1\|71, 7A01\|1\|d2, 7TOQ\|1\|A5S, 5LZV\|1\|7, 6HCM\|1\|72, 6ZVK\|1\|d2, 7TM3\|1\|u, 5LZU\|1\|7, 6HCJ\|1\|71, 6T59\|1\|74, 7QWS\|1\|7, 5LZT\|1\|7, 6HCF\|1\|72, 6SGC\|1\|74, 7QWR\|1\|7, 5LZS\|1\|7, 6GZ5\|1\|A4, 6R7Q\|1\|7, 7QWQ\|1\|7, 4UJE\|1\|A4, 6GZ4\|1\|A4, 6R6P\|1\|7, 7OYD\|1\|K, 4UJD\|1\|A4, 6GZ3\|1\|A4, 6R6G\|1\|7, 7OBR\|1\|7, 4UJC\|1\|A4, 6FTJ\|1\|v, 6R5Q\|1\|7, 7O81\|1\|B7, 8B6C\|1\|7, 4D67\|1\|4, 6FTI\|1\|v, 6P5N\|1\|7, 7O80\|1\|B7, 8B5L\|1\|7, 4D5Y\|1\|4, 6FTG\|1\|v, 6P5K\|1\|7, 7O7Z\|1\|B7	(0)	(1) 8BTK\|1\|B7

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4D5Y\|1\|4	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	119
2	4D67\|1\|4	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	119
3	4UJC\|1\|A4	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	119
4	4UJD\|1\|A4	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	119
5	4UJE\|1\|A4	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	119
6	6ZVK\|1\|d2	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	120
7	7A01\|1\|d2	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.6	120
8	6GZ3\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	119
9	6GZ5\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	119
10	6GZ4\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	119
11	7QWS\|1\|7	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	ELECTRON MICROSCOPY	3.4	120
12	7QWR\|1\|7	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	ELECTRON MICROSCOPY	2.9	120
13	7QWQ\|1\|7	Ternary complex of ribosome nascent chain with SRP and NAC	ELECTRON MICROSCOPY	2.83	120
14	7OBR\|1\|7	RNC-SRP early complex	ELECTRON MICROSCOPY	2.8	120
15	7NFX\|1\|7	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	ELECTRON MICROSCOPY	3.2	120
16	7TOQ\|1\|A5S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	120
17	6R6P\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	120
18	6R6G\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	120
19	6R5Q\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	120
20	7TOR\|1\|A5S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	120
21	7TUT\|1\|u	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.88	120
22	7TM3\|1\|u	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.25	120
23	6MTE\|1\|7	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	120
24	6MTD\|1\|7	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	120
25	6MTB\|1\|7	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	120
26	6MTC\|1\|7	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	120
27	7MDZ\|1\|7	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	119
28	6R7Q\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	120
29	6T59\|1\|74	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	ELECTRON MICROSCOPY	3.11	120
30	5LZS\|1\|7	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	119
31	5LZU\|1\|7	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	120
32	5LZV\|1\|7	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	120
33	5LZT\|1\|7	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	120
34	5LZW\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	120
35	5LZX\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	120
36	5LZZ\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	120
37	5LZY\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	120
38	3JAI\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	120
39	6FTG\|1\|v	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	ELECTRON MICROSCOPY	9.1	120
40	6FTJ\|1\|v	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	ELECTRON MICROSCOPY	4.7	120
41	6FTI\|1\|v	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	ELECTRON MICROSCOPY	4.2	120
42	3JAH\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	120
43	3JAG\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	120
44	3J92\|1\|7	Structure and assembly pathway of the ribosome quality control complex	ELECTRON MICROSCOPY	3.6	120
45	6FRK\|1\|7	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	ELECTRON MICROSCOPY	3.7	120
46	3JAJ\|1\|7	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	120
47	3JAN\|1\|7	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	120
48	6P5J\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	119
49	6P5I\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	119
50	7ZJX\|1\|L7	Rabbit 80S ribosome programmed with SECIS and SBP2	ELECTRON MICROSCOPY	3.1	119
51	6P5K\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	119
52	7O81\|1\|B7	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	119
53	7O80\|1\|B7	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	119
54	7O7Z\|1\|B7	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	119
55	7O7Y\|1\|B7	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	119
56	6SGC\|1\|74	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	119
57	7ZJW\|1\|L7	Rabbit 80S ribosome as it decodes the Sec-UGA codon	ELECTRON MICROSCOPY	2.8	119
58	7OYD\|1\|K	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	119
59	8B6C\|1\|7	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	ELECTRON MICROSCOPY	2.79	120
60	8B5L\|1\|7	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	ELECTRON MICROSCOPY	2.86	120
61	7UCK\|1\|7	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	120
62	7UCJ\|1\|7	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	120
63	6P5N\|1\|7	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	119
64	7NWI\|1\|7	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	120
65	6D90\|1\|7	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	119
66	7NWH\|1\|7	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	ELECTRON MICROSCOPY	4.1	120
67	6D9J\|1\|7	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	119
68	6HCF\|1\|72	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	120
69	6HCM\|1\|72	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	120
70	7NWG\|1\|71	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	ELECTRON MICROSCOPY	3.8	120
71	6HCJ\|1\|71	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	120
72	6HCQ\|1\|71	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	120

Equivalence class NR_all_10255.29 Obsolete

Release history

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