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Equivalence class NR_all_12763.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16VMI|1|A (rep)Large subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
26VLZ|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
35OOL|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.062017-09-13
46ZSC|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
56ZSD|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.72020-09-16
63J9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15
76I9R|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinElectron microscopy3.92020-07-08
85OOM|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.032017-09-13
93J7Y|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.42014-10-15
106NU2|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.92019-04-17
116ZSB|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.52020-09-16
126NU3|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.42019-04-17
136ZSE|1|XALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy52020-09-16

Release history

Release3.1443.1453.1463.147
Date2020-09-162020-09-232020-09-302020-10-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_12763.5NR_all_12763.43.144(9) 5OOL|1|A, 3J9M|1|A, 3J7Y|1|A, 6VMI|1|A, 6VLZ|1|A, 6NU3|1|A, 6NU2|1|A, 6I9R|1|A, 5OOM|1|A(4) 6ZSD|1|XA, 6ZSC|1|XA, 6ZSB|1|XA, 6ZSE|1|XA(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_12763.5NR_all_12763.63.148(13) 5OOM|1|A, 6ZSD|1|XA, 5OOL|1|A, 6ZSC|1|XA, 3J9M|1|A, 6ZSB|1|XA, 3J7Y|1|A, 6VMI|1|A, 6VLZ|1|A, 6NU3|1|A, 6NU2|1|A, 6I9R|1|A, 6ZSE|1|XA(0) (2) 6ZS9|1|XA, 6ZSG|1|XA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15OOM|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.031092
26ZSE|1|XAHuman mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY51501
36ZSB|1|XAHuman mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.51501
46ZSD|1|XAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.71501
56ZSC|1|XAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.51501
66I9R|1|ALarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.91498
75OOL|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.061441
83J9M|1|AStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.51472
93J7Y|1|AStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.41473
106NU3|1|AStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.41472
116NU2|1|AStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.91472
126VLZ|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
136VMI|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
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