Equivalence class NR_all_12971.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7P7Q|1|B (rep) | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume | Electron microscopy | 2.4 | 2022-02-23 |
| 2 | 6W6P|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | MultiBody Refinement of 70S Ribosome from Enterococcus faecalis | Electron microscopy | 2.9 | 2020-10-14 |
| 3 | 7P7T|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III | Electron microscopy | 2.9 | 2022-02-23 |
| 4 | 7NHK|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis | Electron microscopy | 2.9 | 2021-05-05 |
| 5 | 7P7S|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II | Electron microscopy | 3 | 2022-02-23 |
| 6 | 6WU9|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis OG1RF | Bacteria | RF00001 | 50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement | Electron microscopy | 2.9 | 2020-11-04 |
| 7 | 7P7U|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | E. faecalis 70S ribosome with P-tRNA, state IV | Electron microscopy | 3.1 | 2022-02-23 |
| 8 | 6O90|1|B | 5S ribosomal RNA | 4S rRNA | Enterococcus faecalis | Bacteria | RF00001 | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05 | Electron microscopy | 3.49 | 2020-09-23 |
| 9 | 6O8Z|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04 | Electron microscopy | 3.49 | 2020-09-16 |
| 10 | 6O8W|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01 | Electron microscopy | 3.53 | 2020-09-23 |
| 11 | 6O8X|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02 | Electron microscopy | 3.68 | 2020-09-23 |
| 12 | 6O8Y|1|B | 5S ribosomal RNA | 5S rRNA | Enterococcus faecalis | Bacteria | RF00001 | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03 | Electron microscopy | 4.14 | 2020-09-23 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7NHK|1|B | LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis | ELECTRON MICROSCOPY | 2.9 | 114 |
| 2 | 7P7Q|1|B | E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume | ELECTRON MICROSCOPY | 2.4 | 114 |
| 3 | 7P7S|1|B | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II | ELECTRON MICROSCOPY | 3 | 114 |
| 4 | 7P7T|1|B | PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III | ELECTRON MICROSCOPY | 2.9 | 114 |
| 5 | 7P7U|1|B | E. faecalis 70S ribosome with P-tRNA, state IV | ELECTRON MICROSCOPY | 3.1 | 114 |
| 6 | 6O8Y|1|B | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03 | ELECTRON MICROSCOPY | 4.14 | 116 |
| 7 | 6O8X|1|B | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02 | ELECTRON MICROSCOPY | 3.68 | 116 |
| 8 | 6O90|1|B | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05 | ELECTRON MICROSCOPY | 3.49 | 116 |
| 9 | 6O8Z|1|B | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04 | ELECTRON MICROSCOPY | 3.49 | 116 |
| 10 | 6WU9|1|B | 50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement | ELECTRON MICROSCOPY | 2.9 | 116 |
| 11 | 6W6P|1|B | MultiBody Refinement of 70S Ribosome from Enterococcus faecalis | ELECTRON MICROSCOPY | 2.9 | 116 |
| 12 | 6O8W|1|B | Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01 | ELECTRON MICROSCOPY | 3.53 | 116 |