BGSU RNA Site //

Equivalence class NR_all_13304.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
11XST|1|A (rep)RNA (27-MER)Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.Solution NMR2004-12-28
21XSG|1|ARNase P RNA P4 stemSolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69A mutationSolution NMR2004-12-28
31XSU|1|ARNA (27-MER)Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.Solution NMR2004-12-28
41XSH|1|ARNase P RNA P4 stemSolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutationSolution NMR2004-12-28
51F7G|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURESSolution NMR2000-10-09
61F79|1|ARNASE P RNA RIBOZYME, P4 DOMAIN MUTANTSOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURESolution NMR2000-10-09
72CD6|1|A5'-R(*GP*GP*AP*AP*GP*UP*UP*CP*CP*GP *UP*CP*UP*UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliBacteriaRefinement of RNase P P4 stemloop structure using residual dipolar coupling data, C70U mutant cobalt(III) hexammine complexSolution NMR2007-05-01
82CD3|1|A5'-R(*GP*GP*AP*AP*GP*UP*UP*CP*GP*GP *UP*CP*UP*UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliBacteriaRefinement of RNase P P4 stemloop structure using residual dipolar coupling data - C70U mutantSolution NMR2007-05-01
91F6Z|1|ARNASE P RNA RIBOZYME, P4 DOMAIN MUTANTSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDESolution NMR2000-10-09
102CD1|1|A5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliBacteriaRefinement of P4 stemloop structure using residual dipolar coupling dataSolution NMR2007-05-01
112CD5|1|A5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'Escherichia coliBacteriaRefinement of RNase P P4 stemloop structure using residual dipolar couplings - cobalt(III) hexammine complex structureSolution NMR2007-05-01
121F7I|2|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURESSolution NMR2000-10-09
131F6X|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDESolution NMR2000-10-09
141F78|1|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURESolution NMR2000-10-09
151F7F|3|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURESSolution NMR2000-10-09
161F7H|5|ARNASE P RNA RIBOZYME, P4 DOMAINSOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURESSolution NMR2000-10-09

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_13304.1NR_all_00165.12.93(1) 1F7H|5|A(15) 1XSH|1|A, 1F6Z|1|A, 1XSU|1|A, 1F79|1|A, 2CD3|1|A, 1F7G|1|A, 2CD6|1|A, 1XSG|1|A, 1F6X|1|A, 1XST|1|A, 1F78|1|A, 2CD1|1|A, 1F7F|3|A, 2CD5|1|A, 1F7I|2|A(0)
NR_all_13304.1NR_all_36362.12.93(7) 1F79|1|A, 1F7I|2|A, 1XSU|1|A, 2CD6|1|A, 1F6Z|1|A, 1XSH|1|A, 2CD3|1|A(9) 1F6X|1|A, 2CD1|1|A, 1XSG|1|A, 1F7G|1|A, 1F7F|3|A, 1F7H|5|A, 1XST|1|A, 2CD5|1|A, 1F78|1|A(0)
NR_all_13304.1NR_all_52143.12.93(2) 1XSG|1|A, 1XST|1|A(14) 2CD1|1|A, 2CD5|1|A, 1F79|1|A, 1F7G|1|A, 1F7I|2|A, 1F6X|1|A, 1XSU|1|A, 1F78|1|A, 2CD3|1|A, 1F7F|3|A, 2CD6|1|A, 1F7H|5|A, 1XSH|1|A, 1F6Z|1|A(0)
NR_all_13304.1NR_all_56766.12.93(5) 1F78|1|A, 1F7F|3|A, 2CD5|1|A, 1F6X|1|A, 2CD1|1|A(11) 1F7H|5|A, 1XSU|1|A, 1F7G|1|A, 1XST|1|A, 1F79|1|A, 1XSH|1|A, 1XSG|1|A, 2CD6|1|A, 1F7I|2|A, 1F6Z|1|A, 2CD3|1|A(0)
NR_all_13304.1NR_all_83539.12.93(1) 1F7G|1|A(15) 1XSG|1|A, 1F6X|1|A, 1XST|1|A, 1F78|1|A, 2CD1|1|A, 1F7F|3|A, 2CD5|1|A, 1F7I|2|A, 1XSH|1|A, 1F6Z|1|A, 1XSU|1|A, 1F79|1|A, 2CD3|1|A, 1F7H|5|A, 2CD6|1|A(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11XSH|1|ASolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutationSOLUTION NMR27
21XSU|1|ASolution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.SOLUTION NMR27
32CD3|1|ARefinement of RNase P P4 stemloop structure using residual dipolar coupling data - C70U mutantSOLUTION NMR27
42CD6|1|ARefinement of RNase P P4 stemloop structure using residual dipolar coupling data, C70U mutant cobalt(III) hexammine complexSOLUTION NMR27
51F6Z|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDESOLUTION NMR27
61F79|1|ASOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURESOLUTION NMR27
71F7I|2|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURESSOLUTION NMR27
81F7G|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURESSOLUTION NMR27
91XST|1|ASolution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.SOLUTION NMR27
101XSG|1|ASolution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69A mutationSOLUTION NMR27
112CD1|1|ARefinement of P4 stemloop structure using residual dipolar coupling dataSOLUTION NMR27
121F6X|1|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDESOLUTION NMR27
132CD5|1|ARefinement of RNase P P4 stemloop structure using residual dipolar couplings - cobalt(III) hexammine complex structureSOLUTION NMR27
141F78|1|ASOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURESOLUTION NMR27
151F7F|3|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURESSOLUTION NMR27
161F7H|5|ASOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURESSOLUTION NMR27