#PDBTitleRNA source organismCompoundsMethodResolutionDate
11MWL|A (rep)Crystal structure of geneticin bound to the eubacterial 16S rRNA A site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.42003-02-18
21J7T|AComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.52002-05-18
31LC4|ACrystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.542003-04-08
41YRJ|ACrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideBacterial 16 S Ribosomal RNA A Site Oligonucleotide, Bacterial 16 S Ribosomal RNA A Site OligonucleotideX-RAY DIFFRACTION2.72005-06-07
52BE0|AComplex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.632005-12-20
62BEE|AComplex Between Paromomycin derivative JS4 and the 16S-Rrna A Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.62005-12-20
72ESI|AComplex between Kanamycin A and the 16S-Rrna A Site.5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION32005-12-20
82ESJ|AComplex between Lividomycin A and the 16S-Rrna A Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.22005-12-20
92ET3|AComplex Between Gentamicin C1A and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.82005-12-13
102ET4|AComplex Between Neomycin B and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.42005-12-13
112ET5|AComplex Between Ribostamycin and the 16S-RRNA A-Site5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION2.22005-12-13
122F4T|BAsite RNA + designer antibiotic5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'X-RAY DIFFRACTION32006-05-02
132PWT|ACrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group22-mer of the ribosomal decoding site, 22-mer of the ribosomal decoding siteX-RAY DIFFRACTION1.82007-09-18
143S4P|ACrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.562011-09-21
154F8U|ACrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION22012-08-15
164F8V|ACrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.82012-08-15
174GPW|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION32013-04-03
184GPX|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.62013-04-03
194GPY|ACrystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.82013-04-03
204K32|ACrystal structure of geneticin bound to the leishmanial rRNA A-siteLeishmaniaRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')X-RAY DIFFRACTION2.52013-07-31

Release history

Release1.221.231.241.251.261.271.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.60
Date2013-08-032013-08-102013-08-172013-08-242013-08-312013-09-072013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other.

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14GPY|ACrystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.823
21LC4|ACrystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.5423
32ESI|AComplex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION323
41MWL|ACrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.422
54F8U|ACrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
64K32|ACrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.523
74GPW|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION323
84GPX|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.623
92PWT|ACrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
102BE0|AComplex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-RAY DIFFRACTION2.6322
112BEE|AComplex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-RAY DIFFRACTION2.622
123S4P|ACrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
132F4T|BAsite RNA + designer antibioticX-RAY DIFFRACTION323
142ET5|AComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.222
154F8V|ACrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
162ET4|AComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.422
171J7T|AComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.522
182ET3|AComplex Between Gentamicin C1A and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.822
192ESJ|AComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.222
201YRJ|ACrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.723