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Equivalence class NR_all_17405.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14IOA|1|Y (rep)5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
24IO9|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
32ZJR|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
42ZJP|1|Z5S ribosomal RNARIBOSOMAL 5S RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
52ZJQ|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
63CF5|1|Z5S ribosomal RNARRNA-5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
73DLL|1|Z5S ribosomal RNArRNA-5S ribosomal RNADeinococcus radioduransBacteriaRF00001The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
84IOC|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
93FWO|1|B5S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
101Y69|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
113JQ4|1|B5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
121XBP|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
134U67|1|Y5S ribosomal RNA5s RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-ray diffraction3.652015-08-05
143PIP|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
151NWX|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
161NKW|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
171SM1|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
181NWY|1|95S ribosomal RNA5S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
193PIO|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23

Release history

Release2.352.362.372.382.392.402.412.422.432.442.452.462.472.48
Date2015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_17405.2NR_all_17405.12.35(18) 4IOC|1|Y, 4IOA|1|Y, 4IO9|1|Y, 3PIP|1|Y, 3PIO|1|Y, 3JQ4|1|B, 3FWO|1|B, 3DLL|1|Z, 3CF5|1|Z, 2ZJR|1|Y, 2ZJQ|1|Y, 2ZJP|1|Z, 1Y69|1|9, 1XBP|1|9, 1SM1|1|9, 1NWY|1|9, 1NWX|1|9, 1NKW|1|9(1) 4U67|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_17405.2NR_20.0_17405.32.49(19) 1NKW|1|9, 1NWY|1|9, 1XBP|1|9, 2ZJP|1|Z, 2ZJR|1|Y, 3DLL|1|Z, 3JQ4|1|B, 3PIP|1|Y, 4IOA|1|Y, 4U67|1|Y, 1NWX|1|9, 1SM1|1|9, 1Y69|1|9, 2ZJQ|1|Y, 3CF5|1|Z, 3FWO|1|B, 3PIO|1|Y, 4IO9|1|Y, 4IOC|1|Y(0) (2) 5DM6|1|Y, 5DM7|1|Y
NR_all_17405.2NR_3.0_17405.32.49(1) 2ZJR|1|Y(18) 1NWY|1|9, 2ZJP|1|Z, 3FWO|1|B, 4IO9|1|Y, 1NKW|1|9, 1XBP|1|9, 3CF5|1|Z, 3PIO|1|Y, 4IOC|1|Y, 1NWX|1|9, 1Y69|1|9, 3DLL|1|Z, 3PIP|1|Y, 4U67|1|Y, 1SM1|1|9, 2ZJQ|1|Y, 3JQ4|1|B, 4IOA|1|Y(2) 5DM6|1|Y, 5DM7|1|Y
NR_all_17405.2NR_3.5_17405.32.49(14) 1SM1|1|9, 1XBP|1|9, 1Y69|1|9, 1NKW|1|9, 1NWX|1|9, 1NWY|1|9, 3PIO|1|Y, 3PIP|1|Y, 4IO9|1|Y, 4IOA|1|Y, 2ZJQ|1|Y, 2ZJR|1|Y, 3CF5|1|Z, 3DLL|1|Z(5) 4U67|1|Y, 4IOC|1|Y, 3JQ4|1|B, 3FWO|1|B, 2ZJP|1|Z(2) 5DM6|1|Y, 5DM7|1|Y
NR_all_17405.2NR_4.0_17405.32.49(19) 4IO9|1|Y, 4IOC|1|Y, 1NWX|1|9, 1SM1|1|9, 1Y69|1|9, 2ZJQ|1|Y, 3CF5|1|Z, 3FWO|1|B, 3PIO|1|Y, 3PIP|1|Y, 4IOA|1|Y, 4U67|1|Y, 1NKW|1|9, 1NWY|1|9, 1XBP|1|9, 2ZJP|1|Z, 2ZJR|1|Y, 3DLL|1|Z, 3JQ4|1|B(0) (2) 5DM6|1|Y, 5DM7|1|Y
NR_all_17405.2NR_all_17405.32.49(19) 1NKW|1|9, 1NWY|1|9, 1XBP|1|9, 2ZJP|1|Z, 2ZJR|1|Y, 3DLL|1|Z, 3JQ4|1|B, 3PIP|1|Y, 4IOA|1|Y, 4U67|1|Y, 1NWX|1|9, 1SM1|1|9, 1Y69|1|9, 2ZJQ|1|Y, 3CF5|1|Z, 3FWO|1|B, 3PIO|1|Y, 4IO9|1|Y, 4IOC|1|Y(0) (2) 5DM6|1|Y, 5DM7|1|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U67|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.65122
23PIO|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.25120
33PIP|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.45120
42ZJP|1|ZThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.7122
52ZJR|1|YRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.91122
63CF5|1|ZThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.3122
72ZJQ|1|YInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.3122
84IO9|1|YCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
94IOC|1|YCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.6122
104IOA|1|YCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
113DLL|1|ZThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.5122
123FWO|1|BThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.71118
133JQ4|1|BThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.52118
141Y69|1|9RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.33118
151XBP|1|9Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.5118
161NWX|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.5118
171NKW|1|9Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.1118
181NWY|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.3118
191SM1|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.42118
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