BGSU RNA Site //

Equivalence class NR_all_17405.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15DM6|1|Y (rep)5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
24IOA|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IO9|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
42ZJR|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
52ZJP|1|Z5S ribosomal RNARIBOSOMAL 5S RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
62ZJQ|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
73CF5|1|Z5S ribosomal RNARRNA-5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
83DLL|1|Z5S ribosomal RNArRNA-5S ribosomal RNADeinococcus radioduransBacteriaRF00001The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
94IOC|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
105DM7|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
113FWO|1|B5S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
121Y69|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
133JQ4|1|B5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
141XBP|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
154U67|1|Y5S ribosomal RNA5s RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-ray diffraction3.652015-08-05
163PIP|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
171NWX|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
181NKW|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
191SM1|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
201NWY|1|95S ribosomal RNA5S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
213PIO|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23

Release history

Release2.492.502.512.522.532.54
Date2015-11-132015-11-202015-11-272015-12-042015-12-112015-12-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_17405.3NR_all_17405.22.49(19) 3CF5|1|Z, 2ZJR|1|Y, 2ZJQ|1|Y, 2ZJP|1|Z, 1Y69|1|9, 1XBP|1|9, 1SM1|1|9, 1NWY|1|9, 4U67|1|Y, 1NWX|1|9, 4IOC|1|Y, 1NKW|1|9, 4IOA|1|Y, 4IO9|1|Y, 3PIP|1|Y, 3PIO|1|Y, 3JQ4|1|B, 3FWO|1|B, 3DLL|1|Z(2) 5DM6|1|Y, 5DM7|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_17405.3NR_20.0_17405.42.55(21) 1NKW|1|9, 1XBP|1|9, 2ZJR|1|Y, 3JQ4|1|B, 4IOA|1|Y, 5DM7|1|Y, 1SM1|1|9, 2ZJQ|1|Y, 3FWO|1|B, 4IO9|1|Y, 5DM6|1|Y, 1NWY|1|9, 2ZJP|1|Z, 3DLL|1|Z, 3PIP|1|Y, 4U67|1|Y, 1NWX|1|9, 1Y69|1|9, 3CF5|1|Z, 3PIO|1|Y, 4IOC|1|Y(0) (1) 4WFN|1|Y
NR_all_17405.3NR_3.0_17405.42.55(3) 5DM7|1|Y, 2ZJR|1|Y, 5DM6|1|Y(18) 3JQ4|1|B, 4IOA|1|Y, 1SM1|1|9, 2ZJQ|1|Y, 1NWX|1|9, 1Y69|1|9, 3DLL|1|Z, 3PIP|1|Y, 4U67|1|Y, 3FWO|1|B, 4IO9|1|Y, 1NWY|1|9, 2ZJP|1|Z, 1NKW|1|9, 1XBP|1|9, 3CF5|1|Z, 3PIO|1|Y, 4IOC|1|Y(0)
NR_all_17405.3NR_3.5_17405.42.55(16) 1NKW|1|9, 1NWX|1|9, 1NWY|1|9, 1SM1|1|9, 1XBP|1|9, 1Y69|1|9, 2ZJQ|1|Y, 2ZJR|1|Y, 3CF5|1|Z, 3DLL|1|Z, 3PIO|1|Y, 3PIP|1|Y, 4IO9|1|Y, 4IOA|1|Y, 5DM6|1|Y, 5DM7|1|Y(5) 3FWO|1|B, 2ZJP|1|Z, 4U67|1|Y, 4IOC|1|Y, 3JQ4|1|B(0)
NR_all_17405.3NR_4.0_17405.42.55(21) 1NWX|1|9, 1Y69|1|9, 3CF5|1|Z, 3PIO|1|Y, 4IOC|1|Y, 1NKW|1|9, 1XBP|1|9, 2ZJR|1|Y, 3JQ4|1|B, 4IOA|1|Y, 5DM7|1|Y, 1SM1|1|9, 2ZJQ|1|Y, 3FWO|1|B, 4IO9|1|Y, 5DM6|1|Y, 1NWY|1|9, 2ZJP|1|Z, 3DLL|1|Z, 3PIP|1|Y, 4U67|1|Y(0) (1) 4WFN|1|Y
NR_all_17405.3NR_all_17405.42.55(21) 1NKW|1|9, 1XBP|1|9, 2ZJR|1|Y, 3JQ4|1|B, 4IOA|1|Y, 5DM7|1|Y, 1SM1|1|9, 2ZJQ|1|Y, 3FWO|1|B, 4IO9|1|Y, 5DM6|1|Y, 1NWY|1|9, 2ZJP|1|Z, 3DLL|1|Z, 3PIP|1|Y, 4U67|1|Y, 1NWX|1|9, 1Y69|1|9, 3CF5|1|Z, 3PIO|1|Y, 4IOC|1|Y(0) (1) 4WFN|1|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U67|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.65122
23DLL|1|ZThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.5122
34IOA|1|YCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
44IOC|1|YCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.6122
54IO9|1|YCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
62ZJQ|1|YInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.3122
73CF5|1|ZThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.3122
82ZJR|1|YRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.91122
92ZJP|1|ZThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.7122
103PIP|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.45120
113PIO|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.25120
125DM6|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.9122
135DM7|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION3122
143FWO|1|BThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.71118
153JQ4|1|BThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.52118
161Y69|1|9RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.33118
171XBP|1|9Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.5118
181NWX|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.5118
191NKW|1|9Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.1118
201NWY|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.3118
211SM1|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.42118
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