Equivalence class NR_all_17578.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QDV|1|2+ 6QDV|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Intron lariat: MINX RNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 2 | 7W5A|1|H+ 7W5A|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | The cryo-EM structure of human pre-C*-II complex | Electron microscopy | 3.6 | 2022-06-22 |
| 3 | 7W59|1|H+ 7W59|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | The cryo-EM structure of human pre-C*-I complex | Electron microscopy | 3.6 | 2022-06-22 |
| 4 | 6ICZ|1|H+ 6ICZ|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | pre-mRNA, U2snRNA, U6snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 5 | 7W5B|1|H+ 7W5B|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Pre-mRNA, U2 snRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | The cryo-EM structure of human C* complex | Electron microscopy | 4.3 | 2022-06-22 |
| 6 | 5XJC|1|H+ 5XJC|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens small nuclear RNA (U2) gene, pre-mRNA, U6 snRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
Release history
| Release | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_17578.1 | NR_all_38699.1 | 3.236 | (3) 5XJC|1|H+5XJC|1|F, 6ICZ|1|H+6ICZ|1|F, 6QDV|1|2+6QDV|1|6 | (3) 7W59|1|H+7W59|1|F, 7W5A|1|H+7W5A|1|F, 7W5B|1|H+7W5B|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_17578.1 | NR_all_17578.2 | 3.291 | (6) 5XJC|1|H+5XJC|1|F, 6ICZ|1|H+6ICZ|1|F, 6QDV|1|2+6QDV|1|6, 7W59|1|H+7W59|1|F, 7W5A|1|H+7W5A|1|F, 7W5B|1|H+7W5B|1|F | (0) | (1) 8C6J|1|2+8C6J|1|6 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7W5A|1|H+ 7W5A|1|F | The cryo-EM structure of human pre-C*-II complex | ELECTRON MICROSCOPY | 3.6 | 140 | |
| 2 | 7W5B|1|H+ 7W5B|1|F | The cryo-EM structure of human C* complex | ELECTRON MICROSCOPY | 4.3 | 140 | |
| 3 | 7W59|1|H+ 7W59|1|F | The cryo-EM structure of human pre-C*-I complex | ELECTRON MICROSCOPY | 3.6 | 140 | |
| 4 | 5XJC|1|H+ 5XJC|1|F | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 140 | |
| 5 | 6ICZ|1|H+ 6ICZ|1|F | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 140 | |
| 6 | 6QDV|1|2+ 6QDV|1|6 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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