BGSU RNA Site //

Equivalence class NR_all_18337.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
12MEQ|1|A (rep)RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3')Structure of Helix 69 from Escherichia coli 23S Ribosomal RNASolution NMR2014-01-01
22MER|1|ARNA_(5'-R(P*GP*GP*CP*CP*GP*(PSU)P*AP*AP*CP*(PSU)P*AP*(PSU)P*AP*AP*CP*GP*GP*UP*C)-3')Structure of helix 69 from escherichia coli 23s ribosomal rnaSolution NMR2014-01-01
33J0E|1|Aribosomal 23S RNAEscherichia coliBacteriaModels for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complexElectron microscopy9.92012-04-25
43J0D|1|Bribosomal 23S RNAEscherichia coliBacteriaModels for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complexElectron microscopy11.12012-04-25
51QZC|1|B23S rRNAEscherichia coliBacteriaCoordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy92003-11-04
61T1O|1|B19-mer fragment of the 23S rRNAEscherichia coliBacteriaComponents of the control 70S ribosome to provide reference for the RRF binding siteElectron microscopy122004-06-15
71MVR|1|CHelix 69 of 23S rRNAEscherichia coliBacteriaDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeElectron microscopy12.82003-04-01

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.119
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_18337.1NR_all_21404.12.93(1) 1QZC|1|B(6) 3J0E|1|A, 3J0D|1|B, 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1MVR|1|C(0)
NR_all_18337.1NR_all_51389.12.93(2) 3J0E|1|A, 3J0D|1|B(5) 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1QZC|1|B, 1MVR|1|C(0)
NR_all_18337.1NR_all_86102.12.93(4) 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1MVR|1|C(3) 3J0E|1|A, 3J0D|1|B, 1QZC|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_18337.1NR_all_18337.22.120(6) 1MVR|1|C, 2MEQ|1|A, 3J0D|1|B, 1QZC|1|B, 2MER|1|A, 3J0E|1|A(1) 1T1O|1|B(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MVR|1|CDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.819
23J0E|1|AModels for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complexELECTRON MICROSCOPY9.922
33J0D|1|BModels for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complexELECTRON MICROSCOPY11.122
42MER|1|AStructure of helix 69 from escherichia coli 23s ribosomal rnaSOLUTION NMR16
52MEQ|1|AStructure of Helix 69 from Escherichia coli 23S Ribosomal RNASOLUTION NMR19
61T1O|1|BComponents of the control 70S ribosome to provide reference for the RRF binding siteELECTRON MICROSCOPY1219
71QZC|1|BCoordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY920