Equivalence class NR_all_18337.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2MEQ|1|A (rep) | RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3') | Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA | Solution NMR | 2014-01-01 | |||||
| 2 | 2MER|1|A | RNA_(5'-R(P*GP*GP*CP*CP*GP*(PSU)P*AP*AP*CP*(PSU)P*AP*(PSU)P*AP*AP*CP*GP*GP*UP*C)-3') | Structure of helix 69 from escherichia coli 23s ribosomal rna | Solution NMR | 2014-01-01 | |||||
| 3 | 3J0E|1|A | ribosomal 23S RNA | Escherichia coli | Bacteria | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | Electron microscopy | 9.9 | 2012-04-25 | ||
| 4 | 3J0D|1|B | ribosomal 23S RNA | Escherichia coli | Bacteria | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | Electron microscopy | 11.1 | 2012-04-25 | ||
| 5 | 1QZC|1|B | 23S rRNA | Escherichia coli | Bacteria | Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | Electron microscopy | 9 | 2003-11-04 | ||
| 6 | 1T1O|1|B | 19-mer fragment of the 23S rRNA | Escherichia coli | Bacteria | Components of the control 70S ribosome to provide reference for the RRF binding site | Electron microscopy | 12 | 2004-06-15 | ||
| 7 | 1MVR|1|C | Helix 69 of 23S rRNA | Escherichia coli | Bacteria | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | Electron microscopy | 12.8 | 2003-04-01 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_18337.1 | NR_all_21404.1 | 2.93 | (1) 1QZC|1|B | (6) 3J0E|1|A, 3J0D|1|B, 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1MVR|1|C | (0) |
| NR_all_18337.1 | NR_all_51389.1 | 2.93 | (2) 3J0E|1|A, 3J0D|1|B | (5) 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1QZC|1|B, 1MVR|1|C | (0) |
| NR_all_18337.1 | NR_all_86102.1 | 2.93 | (4) 2MER|1|A, 2MEQ|1|A, 1T1O|1|B, 1MVR|1|C | (3) 3J0E|1|A, 3J0D|1|B, 1QZC|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1MVR|1|C | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | ELECTRON MICROSCOPY | 12.8 | 19 |
| 2 | 3J0E|1|A | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 9.9 | 22 |
| 3 | 3J0D|1|B | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 11.1 | 22 |
| 4 | 2MER|1|A | Structure of helix 69 from escherichia coli 23s ribosomal rna | SOLUTION NMR | 16 | |
| 5 | 2MEQ|1|A | Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA | SOLUTION NMR | 19 | |
| 6 | 1T1O|1|B | Components of the control 70S ribosome to provide reference for the RRF binding site | ELECTRON MICROSCOPY | 12 | 19 |
| 7 | 1QZC|1|B | Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | ELECTRON MICROSCOPY | 9 | 20 |