#IFECompound(s)RNA source organismTitleMethodResolutionDate
16M62|1|6 (rep)ITS2-1 miscRNASaccharomyces cerevisiaeCryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.22020-08-26
26EM3|1|65.8S ribosomal RNASaccharomyces cerevisiaeState A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.22017-12-27
37BTB|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.222020-10-28
46ELZ|1|6Internal transcribed spacer 2Saccharomyces cerevisiaeState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32017-12-27
56C0F|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.72018-03-14
63JCT|1|6ITS2-1 miscRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
76EM1|1|65.8S ribosomal RNASaccharomyces cerevisiaeState C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.62017-12-27
86YLY|1|6ITS2Saccharomyces cerevisiaepre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.82020-07-29
96YLX|1|6ITS2Saccharomyces cerevisiaepre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.92020-07-29
106EM4|1|6internal transcribed spacer 1Saccharomyces cerevisiaeState B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.12017-12-27
116EM5|1|6Internal Transcribed Spacer 2Saccharomyces cerevisiaeState D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.32017-12-27
126CB1|1|6ITS2Saccharomyces cerevisiaeYeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.62018-03-14
135Z3G|1|CITS2 RNASaccharomyces cerevisiaeCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.652018-04-11

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.186
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_18489.6NR_all_18489.53.152(10) 3JCT|1|6, 7BTB|1|6, 6YLY|1|6, 6YLX|1|6, 6M62|1|6, 6EM1|1|6, 6ELZ|1|6, 6CB1|1|6, 6C0F|1|6, 5Z3G|1|C(3) 6EM3|1|6, 6EM5|1|6, 6EM4|1|6(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16YLY|1|6pre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.865
26YLX|1|6pre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.965
35Z3G|1|CCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.6565
46CB1|1|6Yeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.687
56C0F|1|6Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.787
66M62|1|6Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.265
73JCT|1|6Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.0865
87BTB|1|6Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.2265
96EM1|1|6State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.665
106ELZ|1|6State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.365
116EM3|1|6State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.265
126EM4|1|6State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.165
136EM5|1|6State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.365