Equivalence class NR_all_18586.13 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4U4U|1|7 (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 2 | 4U4N|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 3 | 4U4R|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 4 | 5FCJ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 2016-05-11 |
| 5 | 4U4Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 6 | 4U3M|1|7 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 7 | 4U55|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 8 | 4U6F|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 9 | 5DAT|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 10 | 4U51|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 11 | 4U3U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 12 | 4U4R|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 13 | 4U52|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 14 | 4U3N|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 15 | 4U3U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 16 | 4U50|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 17 | 4U52|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 18 | 4U4Z|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 19 | 5LYB|1|7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 20 | 5APO|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 2015-12-16 |
| 21 | 4U3N|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 22 | 5DGF|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 23 | 4V8T|1|7 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1 | Electron microscopy | 8.1 | 2014-07-09 |
| 24 | 4V88|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 25 | 4V88|1|A7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 26 | 4V8Z|1|B7 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 6.6 | 2014-07-09 |
| 27 | 4V8Y|1|B7 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 4.3 | 2014-07-09 |
| 28 | 4U4N|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 29 | 5FCJ|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 2016-05-11 |
| 30 | 5I4L|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 31 | 4U55|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 32 | 4U4Q|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 33 | 5FCI|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 2016-05-11 |
| 34 | 4U53|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 35 | 4U3M|1|3 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 36 | 4U4Z|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 37 | 5LYB|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 38 | 4U51|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 39 | 5DAT|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 40 | 4U4U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 41 | 5DGV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 42 | 5I4L|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 43 | 5DC3|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 44 | 4U4Y|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 45 | 5TGA|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 46 | 4U6F|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 47 | 5DC3|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 48 | 5TGM|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 49 | 4U56|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 50 | 4U4Y|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 51 | 5TGA|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 52 | 5DGV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 53 | 5TGM|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 54 | 4U53|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 55 | 5JUP|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 2016-10-05 |
| 56 | 4U50|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 57 | 4U4O|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 58 | 3J78|1|5S | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | Electron microscopy | 6.3 | 2014-08-06 |
| 59 | 5APN|1|7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 | Electron microscopy | 3.91 | 2015-12-16 |
| 60 | 4U56|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 61 | 5DGF|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 62 | 5FCI|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 2016-05-11 |
| 63 | 5JUU|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 64 | 5M1J|1|34 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 2017-01-18 |
| 65 | 3J6Y|1|5S | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | Electron microscopy | 6.1 | 2014-06-11 |
| 66 | 4U4O|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 67 | 5MC6|1|BR | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 2017-01-18 |
| 68 | 3JCT|1|3 | 5S ribosomal RNA | RDN5-2 rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 2016-06-01 |
| 69 | 3J77|1|5S | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | Electron microscopy | 6.2 | 2014-08-06 |
| 70 | 3J6X|1|5S | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | Electron microscopy | 6.1 | 2014-06-11 |
| 71 | 5JUT|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 72 | 5JUS|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | Electron microscopy | 4.2 | 2016-10-05 |
| 73 | 4V6I|1|DC | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | Electron microscopy | 8.8 | 2014-07-09 |
| 74 | 5GAK|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 2016-02-24 |
| 75 | 5JUO|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 76 | 4V7R|1|D2 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 77 | 4V7R|1|B2 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 78 | 5FL8|1|z | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | Electron microscopy | 9.5 | 2015-12-02 |
| 79 | 5JCS|1|z | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | Electron microscopy | 9.5 | 2016-11-16 |
| 80 | 4V7F|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Arx1 pre-60S particle. | Electron microscopy | 8.7 | 2014-07-09 |
Release history
| Release | 2.111 |
|---|---|
| Date | 2017-01-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_18586.13 | NR_all_18586.12 | 2.111 | (76) 4U4O|1|3, 4U6F|1|3, 5FCJ|1|7, 4U4Y|1|3, 4V8T|1|7, 5JUS|1|D, 4U3M|1|3, 4U52|1|3, 5DC3|1|7, 4U4N|1|7, 4U56|1|7, 5FCJ|1|3, 4U4U|1|7, 4V88|1|A7, 5JUP|1|D, 3JCT|1|3, 4U51|1|7, 5DC3|1|3, 4U4N|1|3, 4U56|1|3, 5FCI|1|7, 4U4U|1|3, 4V88|1|A3, 5JUO|1|D, 3J78|1|5S, 4U51|1|3, 5DAT|1|7, 5TGA|1|7, 4U3U|1|7, 4U55|1|7, 5FCI|1|3, 4U4R|1|7, 4V7R|1|D2, 5JCS|1|z, 3J77|1|5S, 4U50|1|7, 5DAT|1|3, 5TGA|1|3, 4U55|1|3, 5DGV|1|7, 4U4R|1|3, 4V7R|1|B2, 5I4L|1|7, 3J6Y|1|5S, 4U50|1|3, 5APO|1|7, 5LYB|1|7, 4U3U|1|3, 4U53|1|7, 5DGV|1|3, 4U4Q|1|7, 4V7F|1|3, 5I4L|1|3, 3J6X|1|5S, 4U4Z|1|7, 5APN|1|7, 5LYB|1|3, 4U3N|1|7, 5DGF|1|7, 4U4Q|1|3, 4V6I|1|DC, 5GAK|1|3, 4U4Z|1|3, 4V8Z|1|B7, 5JUU|1|D, 4U3N|1|3, 4U53|1|3, 5DGF|1|3, 4U4O|1|7, 4U6F|1|7, 5FL8|1|z, 4U4Y|1|7, 4V8Y|1|B7, 5JUT|1|D, 4U3M|1|7, 4U52|1|7 | (4) 5M1J|1|34, 5TGM|1|7, 5TGM|1|3, 5MC6|1|BR | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_18586.13 | NR_all_18586.14 | 2.112 | (80) 4U4O|1|7, 5M1J|1|34, 4V8Y|1|B7, 4U4U|1|3, 5TGM|1|7, 5DAT|1|7, 4U4Z|1|7, 5FCI|1|3, 4U52|1|7, 3J78|1|5S, 5GAK|1|3, 4U56|1|3, 4U3N|1|7, 5JUS|1|D, 4V7F|1|3, 4V8T|1|7, 4U52|1|3, 5JUP|1|D, 4U4O|1|3, 5LYB|1|7, 4U4R|1|7, 5DAT|1|3, 5DGV|1|3, 5DGV|1|7, 3J77|1|5S, 4U55|1|7, 5TGM|1|3, 4U4Z|1|3, 5DGF|1|7, 5FL8|1|z, 4U3N|1|3, 4V6I|1|DC, 4V88|1|A7, 4U51|1|7, 5JUO|1|D, 4U4N|1|7, 4U4R|1|3, 5APO|1|7, 3J6Y|1|5S, 4U55|1|3, 5LYB|1|3, 5TGA|1|7, 4U4Y|1|7, 5DGF|1|3, 5FCJ|1|7, 4U3M|1|7, 4U6F|1|7, 4V88|1|A3, 4U51|1|3, 5JCS|1|z, 4U4N|1|3, 4U4Q|1|7, 5APN|1|7, 3J6X|1|5S, 4U53|1|7, 5JUU|1|D, 5TGA|1|3, 4U4Y|1|3, 5DC3|1|7, 5FCJ|1|3, 4U3M|1|3, 4U6F|1|3, 4U50|1|7, 5I4L|1|7, 4U3U|1|7, 4V7R|1|D2, 4U4Q|1|3, 4V8Z|1|B7, 4U53|1|3, 5JUT|1|D, 5MC6|1|BR, 4U4U|1|7, 5DC3|1|3, 5FCI|1|7, 3JCT|1|3, 4U56|1|7, 4U50|1|3, 5I4L|1|3, 4U3U|1|3, 4V7R|1|B2 | (0) | (3) 5DGE|1|3, 5DGE|1|7, 5H4P|1|3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V7R|1|B2 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 121 |
| 2 | 4V7R|1|D2 | Yeast 80S ribosome. | X-RAY DIFFRACTION | 4 | 121 |
| 3 | 5JUS|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 4.2 | 121 |
| 4 | 5JUO|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 121 |
| 5 | 5JUT|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 121 |
| 6 | 5JUU|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 121 |
| 7 | 5JUP|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 121 |
| 8 | 5GAK|1|3 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | ELECTRON MICROSCOPY | 3.88 | 121 |
| 9 | 5MC6|1|BR | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 121 |
| 10 | 4U4O|1|7 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 121 |
| 11 | 5TGM|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 121 |
| 12 | 4U52|1|7 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 13 | 5DAT|1|7 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 121 |
| 14 | 5DGF|1|7 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 121 |
| 15 | 5DGV|1|7 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 121 |
| 16 | 4U6F|1|7 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 17 | 5DC3|1|7 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 121 |
| 18 | 4U56|1|7 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 121 |
| 19 | 4U50|1|7 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 20 | 4U51|1|7 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 21 | 4U53|1|7 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 |
| 22 | 4U4U|1|7 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 23 | 4U4Q|1|7 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 24 | 4U4N|1|7 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 25 | 4U4Z|1|7 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 26 | 4U3N|1|7 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 27 | 4U55|1|7 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 28 | 4U4Y|1|7 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 29 | 4U3M|1|7 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 30 | 4U4R|1|7 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 |
| 31 | 4U3U|1|7 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 |
| 32 | 4V88|1|A7 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 |
| 33 | 4V8Y|1|B7 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 4.3 | 121 |
| 34 | 4V8Z|1|B7 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | ELECTRON MICROSCOPY | 6.6 | 121 |
| 35 | 4V8T|1|7 | Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1 | ELECTRON MICROSCOPY | 8.1 | 121 |
| 36 | 5TGA|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 121 |
| 37 | 5LYB|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 121 |
| 38 | 5I4L|1|7 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 39 | 5FCJ|1|7 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 40 | 5FCI|1|7 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 121 |
| 41 | 5APN|1|7 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.91 | 121 |
| 42 | 5APO|1|7 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.41 | 121 |
| 43 | 5TGM|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 121 |
| 44 | 5DGF|1|3 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 121 |
| 45 | 5DC3|1|3 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 121 |
| 46 | 5DGV|1|3 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 121 |
| 47 | 5LYB|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 121 |
| 48 | 5TGA|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 121 |
| 49 | 5DAT|1|3 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 121 |
| 50 | 4U6F|1|3 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 51 | 4U52|1|3 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 52 | 4U50|1|3 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 53 | 4U53|1|3 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 |
| 54 | 4U3N|1|3 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 55 | 4U4Z|1|3 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 56 | 4U4N|1|3 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 57 | 4U55|1|3 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 58 | 4U51|1|3 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 59 | 4U4Q|1|3 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 60 | 4U4U|1|3 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 61 | 4U3M|1|3 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 |
| 62 | 4V88|1|A3 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 |
| 63 | 4U4R|1|3 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 |
| 64 | 4U3U|1|3 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 |
| 65 | 4U4Y|1|3 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 |
| 66 | 5I4L|1|3 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 67 | 5FCJ|1|3 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 121 |
| 68 | 5FCI|1|3 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 121 |
| 69 | 4U56|1|3 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 121 |
| 70 | 4U4O|1|3 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.6 | 121 |
| 71 | 5M1J|1|34 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 121 |
| 72 | 3JCT|1|3 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 121 |
| 73 | 3J78|1|5S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 121 |
| 74 | 3J77|1|5S | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 121 |
| 75 | 3J6Y|1|5S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 121 |
| 76 | 3J6X|1|5S | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 121 |
| 77 | 5JCS|1|z | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | ELECTRON MICROSCOPY | 9.5 | 121 |
| 78 | 5FL8|1|z | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | ELECTRON MICROSCOPY | 9.5 | 121 |
| 79 | 4V6I|1|DC | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 118 |
| 80 | 4V7F|1|3 | Arx1 pre-60S particle. | ELECTRON MICROSCOPY | 8.7 | 121 |