NR_all_18586.18

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5TBW\|1\|AS (rep)	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
2	5TBW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	4V88\|1\|A7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
5	5I4L\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
6	5MEI\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
7	5MEI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
8	5LYB\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
9	5I4L\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
10	5LYB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
11	5TGM\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
12	5TGM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
13	4V7R\|1\|B2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
14	4V7R\|1\|D2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
15	5DAT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
16	5DGV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
17	5DGF\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
18	5DAT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
19	5DGE\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
20	5DGV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
21	5TGA\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
22	5DC3\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
23	5DGE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
24	5DC3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
25	5TGA\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
26	5DGF\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
27	4U4R\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
28	4U3U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
29	4U4R\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
30	4U3U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
31	4U4Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
32	4U4Q\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
33	4U3M\|1\|7	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
34	4U52\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
35	4U3M\|1\|3	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
36	4U4U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
37	4U6F\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
38	5T62\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.1	2017-02-08
39	4U52\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
40	4U4U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
41	4U4N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
42	4U6F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
43	3JCT\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
44	4U3N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
45	4U4Z\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
46	4U4N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
47	4U4Z\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
48	4U55\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
49	4U50\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
50	5M1J\|1\|34	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
51	4U50\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
52	4U3N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
53	4U4Y\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
54	4U4Y\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
55	4U51\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
56	4U55\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
57	5H4P\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	2017-01-25
58	4U53\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
59	5APO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
60	4U51\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
61	4U53\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
62	5JUP\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
63	4U56\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
64	4U56\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
65	5MC6\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
66	5JUT\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
67	5JUO\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
68	5JUU\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
69	5APN\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
70	4U4O\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
71	5JUS\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	Electron microscopy	4.2	2016-10-05
72	5T6R\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	Electron microscopy	4.2	2017-02-08
73	4U4O\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
74	4V8Y\|1\|B7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	4.3	2014-07-09
75	5GAK\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24
76	3J6Y\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	Electron microscopy	6.1	2014-06-11
77	3J6X\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	Electron microscopy	6.1	2014-06-11
78	3J77\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	Electron microscopy	6.2	2014-08-06
79	3J78\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	Electron microscopy	6.3	2014-08-06
80	4V8Z\|1\|B7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	6.6	2014-07-09
81	4V8T\|1\|7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	Electron microscopy	8.1	2014-07-09
82	4V7F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Arx1 pre-60S particle.	Electron microscopy	8.7	2014-07-09
83	5FL8\|1\|z	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	Electron microscopy	9.5	2015-12-02
84	5JCS\|1\|z	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	Electron microscopy	9.5	2016-11-16
85	4V6I\|1\|DC	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	Electron microscopy	8.8	2014-07-09

Release history

Release	3.0	3.1	3.2	3.3	3.4	3.5	3.6	3.7	3.8
Date	2017-12-15	2017-12-22	2017-12-29	2018-01-05	2018-01-12	2018-01-19	2018-01-26	2018-02-02	2018-02-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_18586.18	NR_all_18586.17	3.0	(85) 4U52\|1\|7, 4U3M\|1\|7, 5TGA\|1\|3, 5DGF\|1\|7, 4U6F\|1\|7, 4U4O\|1\|7, 5JCS\|1\|z, 4V8Y\|1\|B7, 4U4Y\|1\|7, 5M1J\|1\|34, 5APO\|1\|7, 4U52\|1\|3, 4U3M\|1\|3, 5TBW\|1\|3, 5DGE\|1\|7, 4U6F\|1\|3, 4U4O\|1\|3, 5I4L\|1\|3, 4V8T\|1\|7, 4U4Y\|1\|3, 5LYB\|1\|3, 4U51\|1\|7, 3JCT\|1\|3, 5T6R\|1\|B, 5DGE\|1\|3, 4U56\|1\|7, 4U4N\|1\|7, 5H4P\|1\|3, 4V88\|1\|A7, 4U4U\|1\|7, 5JUU\|1\|D, 5T62\|1\|B, 5DC3\|1\|7, 4U55\|1\|7, 4U3U\|1\|7, 5GAK\|1\|3, 4V7R\|1\|D2, 4U4R\|1\|7, 5JUT\|1\|D, 4U50\|1\|7, 3J77\|1\|5S, 4U55\|1\|3, 4U3U\|1\|3, 5TGM\|1\|7, 5FL8\|1\|z, 4V7R\|1\|B2, 4U4R\|1\|3, 5JUS\|1\|D, 4U50\|1\|3, 3J6Y\|1\|5S, 5MEI\|1\|AS, 5DC3\|1\|3, 4U53\|1\|7, 4U3N\|1\|7, 5TGA\|1\|7, 5DGV\|1\|3, 4V7F\|1\|3, 4U4Q\|1\|7, 5JUO\|1\|D, 4U4Z\|1\|7, 3J6X\|1\|5S, 5MC6\|1\|BR, 5DAT\|1\|3, 4U53\|1\|3, 4U3N\|1\|3, 4V6I\|1\|DC, 4U4Q\|1\|3, 4V8Z\|1\|B7, 4U4Z\|1\|3, 5TBW\|1\|AS, 5DGF\|1\|3, 5I4L\|1\|7, 5LYB\|1\|7, 5APN\|1\|7, 4U56\|1\|3, 4U4N\|1\|3, 4V88\|1\|A3, 4U4U\|1\|3, 4U51\|1\|3, 3J78\|1\|5S, 5TGM\|1\|3, 5DGV\|1\|7, 5JUP\|1\|D, 5MEI\|1\|3, 5DAT\|1\|7	(0)	(4) 5FCJ\|1\|3, 5FCI\|1\|3, 5FCI\|1\|7, 5FCJ\|1\|7

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_18586.18	NR_all_18586.19	3.9	(85) 4U4Q\|1\|7, 5JUU\|1\|D, 4U6F\|1\|7, 5FL8\|1\|z, 4U3M\|1\|7, 5TGA\|1\|7, 4U51\|1\|7, 5DAT\|1\|3, 4U4R\|1\|7, 5LYB\|1\|7, 4V7F\|1\|3, 5H4P\|1\|3, 4U3N\|1\|7, 4U52\|1\|7, 5TGM\|1\|7, 5DC3\|1\|3, 4U4U\|1\|7, 5MC6\|1\|BR, 4V7R\|1\|D2, 4U3U\|1\|7, 5I4L\|1\|7, 4U53\|1\|7, 5DGE\|1\|3, 3J6X\|1\|5S, 5MEI\|1\|AS, 4U4Y\|1\|7, 4V88\|1\|A7, 4U4N\|1\|7, 5JUO\|1\|D, 4U55\|1\|7, 5DGF\|1\|3, 3J77\|1\|5S, 5T6R\|1\|B, 4U4Z\|1\|7, 4V8Y\|1\|B7, 4U4O\|1\|7, 5JUS\|1\|D, 4U56\|1\|7, 5DGV\|1\|3, 3JCT\|1\|3, 5TBW\|1\|AS, 4U50\|1\|7, 5APN\|1\|7, 4U3M\|1\|3, 4U4R\|1\|3, 4U3N\|1\|3, 4U4U\|1\|3, 4U3U\|1\|3, 4U4N\|1\|3, 3J6Y\|1\|5S, 4U4O\|1\|3, 3J78\|1\|5S, 4U4Q\|1\|3, 4U6F\|1\|3, 4U51\|1\|3, 4V6I\|1\|DC, 4U52\|1\|3, 4V7R\|1\|B2, 4U53\|1\|3, 4U4Y\|1\|3, 4U55\|1\|3, 4U4Z\|1\|3, 4U56\|1\|3, 4U50\|1\|3, 5DGV\|1\|7, 5APO\|1\|7, 5GAK\|1\|3, 5DAT\|1\|7, 5DC3\|1\|7, 4V88\|1\|A3, 5DGE\|1\|7, 4V8T\|1\|7, 5DGF\|1\|7, 4V8Z\|1\|B7, 5TGA\|1\|3, 5LYB\|1\|3, 5TGM\|1\|3, 5M1J\|1\|34, 5I4L\|1\|3, 5MEI\|1\|3, 5JCS\|1\|z, 5T62\|1\|B, 5JUP\|1\|D, 5TBW\|1\|3, 5JUT\|1\|D	(0)	(8) 5NDV\|1\|3, 5NDW\|1\|7, 5NDV\|1\|7, 5NDW\|1\|3, 5OBM\|1\|3, 5NDG\|1\|7, 5NDG\|1\|3, 5OBM\|1\|7

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V6I\|1\|DC	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	ELECTRON MICROSCOPY	8.8	118
2	5FL8\|1\|z	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	ELECTRON MICROSCOPY	9.5	121
3	5JCS\|1\|z	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	ELECTRON MICROSCOPY	9.5	121
4	3J78\|1\|5S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	ELECTRON MICROSCOPY	6.3	121
5	3J77\|1\|5S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	ELECTRON MICROSCOPY	6.2	121
6	3J6Y\|1\|5S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	ELECTRON MICROSCOPY	6.1	121
7	3J6X\|1\|5S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	ELECTRON MICROSCOPY	6.1	121
8	5T6R\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	ELECTRON MICROSCOPY	4.2	121
9	5T62\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.1	121
10	5H4P\|1\|3	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	121
11	3JCT\|1\|3	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	121
12	5M1J\|1\|34	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	121
13	5TGM\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
14	5DGF\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
15	5DGE\|1\|3	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
16	5DC3\|1\|3	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
17	5DGV\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
18	5LYB\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
19	5TGA\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
20	5DAT\|1\|3	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
21	4U56\|1\|3	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
22	5TBW\|1\|3	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
23	4U51\|1\|3	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
24	4U55\|1\|3	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
25	4U6F\|1\|3	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
26	4U52\|1\|3	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
27	4U4Q\|1\|3	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
28	4U4U\|1\|3	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
29	4U3M\|1\|3	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
30	4U3U\|1\|3	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
31	4V88\|1\|A3	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
32	4U4R\|1\|3	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
33	4U3N\|1\|3	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
34	4U4Z\|1\|3	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
35	4U4N\|1\|3	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
36	4U4Y\|1\|3	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
37	5I4L\|1\|3	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
38	4U53\|1\|3	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
39	4U50\|1\|3	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
40	5MEI\|1\|3	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
41	4U4O\|1\|3	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
42	5APO\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	121
43	5APN\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	121
44	5TBW\|1\|AS	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
45	5MEI\|1\|AS	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
46	5TGA\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
47	5I4L\|1\|7	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
48	4V8T\|1\|7	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	ELECTRON MICROSCOPY	8.1	121
49	4V8Y\|1\|B7	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	4.3	121
50	4V8Z\|1\|B7	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	6.6	121
51	4V88\|1\|A7	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
52	4U3U\|1\|7	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
53	4U4R\|1\|7	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
54	4U3M\|1\|7	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
55	4U4Y\|1\|7	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
56	4U55\|1\|7	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
57	4U4Z\|1\|7	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
58	4U3N\|1\|7	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
59	5LYB\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
60	4U4N\|1\|7	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
61	4U4Q\|1\|7	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
62	4U4U\|1\|7	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
63	4U53\|1\|7	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
64	4U51\|1\|7	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
65	4U50\|1\|7	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
66	4U56\|1\|7	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
67	5DC3\|1\|7	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
68	5DGE\|1\|7	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
69	4U6F\|1\|7	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
70	5DGV\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
71	5DGF\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
72	5DAT\|1\|7	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
73	4U52\|1\|7	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
74	5TGM\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
75	4U4O\|1\|7	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
76	5MC6\|1\|BR	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	121
77	5GAK\|1\|3	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	121
78	5JUP\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	121
79	5JUU\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
80	5JUT\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
81	5JUO\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
82	5JUS\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	4.2	121
83	4V7R\|1\|D2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
84	4V7R\|1\|B2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
85	4V7F\|1\|3	Arx1 pre-60S particle.	ELECTRON MICROSCOPY	8.7	121

Equivalence class NR_all_18586.18 Obsolete

Release history

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