Equivalence class NR_all_19598.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z1I|1|A (rep) | RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 1.9 | 2018-05-30 | |||
| 2 | 5Z1H|1|B+ 5Z1H|1|A | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-ray diffraction | 2.4 | 2018-05-30 | |||
| 3 | 5ZEI|1|A+ 5ZEI|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-ray diffraction | 2.1 | 2018-03-21 | |||
| 4 | 5ZEG|1|A+ 5ZEG|1|B+ 5ZEG|1|C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-ray diffraction | 2.4 | 2018-03-21 | |||
| 5 | 5ZEM|1|A+ 5ZEM|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-ray diffraction | 3.1 | 2018-03-21 | |||
| 6 | 5ZEJ|1|A+ 5ZEJ|1|B | RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-ray diffraction | 3.5 | 2018-03-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_19598.2 | NR_all_19598.1 | 3.24 | (4) 5ZEM|1|A+5ZEM|1|B, 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | (2) 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_19598.2 | NR_all_19598.3 | 3.31 | (6) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B, 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B | (0) | (2) 5XZ1|1|C+5XZ1|1|D, 5XZ1|1|A+5XZ1|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5ZEI|1|A+5ZEI|1|B | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin | X-RAY DIFFRACTION | 2.1 | 21 |
| 2 | 5ZEJ|1|A+5ZEJ|1|B | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin | X-RAY DIFFRACTION | 3.5 | 21 |
| 3 | 5ZEM|1|A+5ZEM|1|B | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin | X-RAY DIFFRACTION | 3.1 | 21 |
| 4 | 5Z1I|1|A | Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 1.9 | 21 |
| 5 | 5Z1H|1|B+5Z1H|1|A | Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin | X-RAY DIFFRACTION | 2.4 | 23 |
| 6 | 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 22 |