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Equivalence class NR_all_19598.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15Z1I|1|A (rep)RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction1.92018-05-30
25ZEG|1|A+ 5ZEG|1|B+ 5ZEG|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.42018-03-21
35ZEI|1|A+ 5ZEI|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12018-03-21
45XZ1|1|C+ 5XZ1|1|DRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
55XZ1|1|A+ 5XZ1|1|BRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
65Z1H|1|B+ 5Z1H|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction2.42018-05-30
75ZEJ|1|A+ 5ZEJ|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-ray diffraction3.52018-03-21
85ZEM|1|A+ 5ZEM|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-ray diffraction3.12018-03-21

Release history

Release3.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.58
Date2018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_19598.3NR_all_19598.23.31(6) 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B, 5ZEJ|1|A+5ZEJ|1|B, 5ZEI|1|A+5ZEI|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C(2) 5XZ1|1|A+5XZ1|1|B, 5XZ1|1|C+5XZ1|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_19598.3NR_all_03323.13.59(1) 5ZEI|1|A+5ZEI|1|B(7) 5XZ1|1|A+5XZ1|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B, 5XZ1|1|C+5XZ1|1|D, 5ZEJ|1|A+5ZEJ|1|B(0)
NR_all_19598.3NR_all_46565.13.59(1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C(7) 5XZ1|1|C+5XZ1|1|D, 5ZEJ|1|A+5ZEJ|1|B, 5XZ1|1|A+5XZ1|1|B, 5ZEI|1|A+5ZEI|1|B, 5Z1I|1|A, 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B(0)
NR_all_19598.3NR_all_50848.13.59(1) 5ZEJ|1|A+5ZEJ|1|B(7) 5Z1H|1|B+5Z1H|1|A, 5ZEM|1|A+5ZEM|1|B, 5XZ1|1|C+5XZ1|1|D, 5ZEI|1|A+5ZEI|1|B, 5XZ1|1|A+5XZ1|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5Z1I|1|A(0)
NR_all_19598.3NR_all_97151.33.59(5) 5XZ1|1|A+5XZ1|1|B, 5ZEM|1|A+5ZEM|1|B, 5XZ1|1|C+5XZ1|1|D, 5Z1H|1|B+5Z1H|1|A, 5Z1I|1|A(3) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5ZEI|1|A+5ZEI|1|B, 5ZEJ|1|A+5ZEJ|1|B(36) 5BXK|1|A+5BXK|1|B, 2ET5|1|A+2ET5|1|B, 5BXK|1|C+5BXK|1|D, 2F4T|1|B+2F4T|1|A, 4PDQ|1|A+4PDQ|1|B, 5Z71|1|B+5Z71|1|A, 2PWT|1|A+2PWT|1|B, 4WCQ|1|A+4WCQ|1|B, 1LC4|1|A+1LC4|1|B, 3BNL|1|A+3BNL|1|B, 4WCR|1|A+4WCR|1|B, 3S4P|1|A+3S4P|1|B, 4WCS|1|A+4WCS|1|B, 3WRU|1|A+3WRU|1|B, 5BWS|1|C+5BWS|1|D, 4F8U|1|A+4F8U|1|B, 4F8V|1|A+4F8V|1|B, 4GPX|1|A+4GPX|1|B, 4GPY|1|A+4GPY|1|B, 4K32|1|A+4K32|1|B, 4P3S|1|B+4P3S|1|A, 1MWL|1|A+1MWL|1|B, 1YRJ|1|A+1YRJ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2BEE|1|A+2BEE|1|B, 2ESI|1|A+2ESI|1|B, 2ESJ|1|A+2ESJ|1|B, 5BWS|1|A+5BWS|1|B, 2ET4|1|A+2ET4|1|B, 2G5Q|1|A+2G5Q|1|B, 1J7T|1|A+1J7T|1|B, 3TD1|1|B+3TD1|1|A, 4GPW|1|A+4GPW|1|B, 4P20|1|A+4P20|1|B, 2BE0|1|A+2BE0|1|B, 2ET3|1|A+2ET3|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15XZ1|1|C+5XZ1|1|DCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122
25XZ1|1|A+5XZ1|1|BCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122
35Z1I|1|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION1.921
45ZEI|1|A+5ZEI|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
55ZEJ|1|A+5ZEJ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.521
65ZEM|1|A+5ZEM|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.121
75Z1H|1|B+5Z1H|1|ACrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION2.423
85ZEG|1|A+5ZEG|1|B+5ZEG|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.422
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