#IFECompound(s)RNA source organismTitleMethodResolutionDate
12ZM5|1|C (rep)tRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.552009-04-14
22ZXU|1|CtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.752009-05-26
33FOZ|1|CtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.52009-01-20
43L0U|1|AUnmodified tRNAPheThe crystal structure of unmodified tRNAPhe from Escherichia coliX-RAY DIFFRACTION32010-03-16
54V5E|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
64V9D|1|BVphenylalanine specific transfer RNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
73FOZ|1|DtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.52009-01-20
84V5D|1|AVP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
94V5D|1|CVP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
104V9C|1|AVPhenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
114V5Q|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
124V5S|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
134V5L|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12014-07-09
144V5P|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
154V5P|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
162ZM5|1|DtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.552009-04-14
174V6F|1|CCTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
184V5J|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
194W2F|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
205AFI|1|yA/T-site Phe-tRNAPhe, mRNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
214V5R|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
224V5E|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
234V5R|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
244V5Q|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
254V6L|1|AEA/T-site tRNA PheEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22014-07-09
262ZXU|1|DtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.752009-05-26
274V6F|1|BCTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
284V5S|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
294W2E|1|wP-site tRNA, mRNAEscherichia coliCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
304V9H|1|AVPE hybrid state tRNA Phe, mRNAEscherichia coliCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
311VY5|1|AWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
324V6K|1|BBA/T-site tRNA Phe, mRNAEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252014-07-09
334V6K|1|BEA/T-site tRNA Phe, mRNAEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252014-07-09
344WQU|1|BWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
354WQF|1|BWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
364WQU|1|DWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
374WQF|1|DWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
384V5J|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
394W2I|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
401VY4|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
414W2E|1|xE-site tRNAEscherichia coliCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
424V69|1|AWP-site tRNA fMet (Unmodified bases except for Thymine 54)Escherichia coliTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72014-07-09
434V7D|1|BWtRNA, mRNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62014-07-09
444P6F|1|XWE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.62014-10-01
454W2G|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
461VY5|1|CWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
474WPO|1|DWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
484V6F|1|CBTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
491VY4|1|AWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
504V4Y|1|ABtRNA PHE (unmodified bases), mRNAEscherichia coliCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.52014-07-09
514V9D|1|AVphenylalanine specific transfer RNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
524V7C|1|AWtRNA, mRNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62014-07-09
534W2G|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
544W2F|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
554WQU|1|BYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
564WPO|1|BYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
574WQF|1|BYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
584V4I|1|zP-site PHE-tRNA, MRNAEscherichia coliCrystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.X-RAY DIFFRACTION3.712014-07-09
591VY4|1|CWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
604W2G|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
614V6F|1|BBTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
624V6F|1|BDTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
634V6F|1|CDTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
643J46|1|aA-tRNAEscherichia coliStructure of the SecY protein translocation channel in actionELECTRON MICROSCOPY10.12013-10-23
654W2F|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
661VY4|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
674W2G|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
684V5G|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62014-07-09
694V51|1|AWE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
704V5G|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62014-07-09
711VY5|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
724W2I|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
734W2I|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
744V4Y|1|ADtRNA PHE (unmodified bases), mRNAEscherichia coliCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.52014-07-09
754V9I|1|AWE-SITE tRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
764V5D|1|AWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
774V5C|1|CWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
784P6F|1|QWE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.62014-10-01
794V6L|1|ABA/T-site tRNA Phe, mRNAEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22014-07-09
804WPO|1|BWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
814W2I|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
824WQU|1|DYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
834WPO|1|DYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
844WQF|1|DYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
854W2F|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
864V4Y|1|ACtRNA PHE (unmodified bases), mRNAEscherichia coliCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.52014-07-09
874V97|1|AWE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.522014-07-09
884V5D|1|CWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
894V51|1|CWE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
901VY5|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
914V8J|1|AWtRNA-PheEscherichia coliCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.92014-07-09
924V5C|1|AWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
934V5Q|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
944V5E|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
954V7C|1|AVtRNA, mRNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62014-07-09
964V5P|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
974V5R|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
984V8J|1|CWtRNA-PheEscherichia coliCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.92014-07-09
994V5P|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1004V97|1|CWE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.522014-07-09
1014V9I|1|CWE-SITE tRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
1024V5D|1|AYP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
1034V5J|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
1044V5D|1|CYP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
1054V5L|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12014-07-09
1064V9C|1|CVPhenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
1074V5S|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1084V7D|1|BVtRNA, mRNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62014-07-09
1094V5R|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1104V5C|1|CYA-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
1114V5G|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62014-07-09
1124V5G|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62014-07-09
1134V5J|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
1144V5Q|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1154W2H|1|AYE-site tRNA Acceptor StemEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
1164V5E|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
1174V5C|1|AYA-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
1184V5S|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1191VY7|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
1201VY7|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
1214W2H|1|CYE-site tRNA Acceptor StemEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15

Release history

Release2.14
Date2015-03-13

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_19951.3NR_2.5_19951.42.15(6) 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 3FOZ|1|C, 3FOZ|1|D, 4W2F|1|CY(115) 4W2G|1|CW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 5AFI|1|y, 1VY4|1|AW, 1VY4|1|AY, 1VY4|1|CW, 1VY4|1|CY, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY7|1|AY, 1VY7|1|CY, 4WQU|1|BW, 4WQF|1|DY, 4W2G|1|CY, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4W2I|1|CW, 4W2I|1|CY, 4WPO|1|BW, 4WPO|1|BY, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WQF|1|DW, 2ZM5|1|C, 2ZM5|1|D, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5E|1|CW, 4V5G|1|AV, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|CW, 4V5C|1|CY, 4V5C|1|CW, 2ZXU|1|C, 2ZXU|1|D, 3J46|1|a, 3L0U|1|A, 4P6F|1|QW, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5C|1|AW, 4V5C|1|AY, 4V5J|1|AV, 4W2G|1|AY, 4V5L|1|AV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5P|1|CW, 4V5Q|1|AV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5R|1|CW, 4V5J|1|CW, 4V5J|1|CV, 4V5J|1|AW, 4V5S|1|AV, 4V5S|1|AW, 4V7D|1|BW, 4V8J|1|AW, 4V8J|1|CW, 4V97|1|AW, 4V97|1|CW, 4V9C|1|AV, 4V9C|1|CV, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV(4) 4Y4P|1|2y, 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w
NR_all_19951.3NR_20.0_19951.42.15(121) 4V8J|1|AW, 4V7D|1|BW, 4V7D|1|BV, 4V8J|1|CW, 4V97|1|AW, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V6L|1|AB, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9C|1|CV, 4V97|1|CW, 4V9C|1|AV, 4V5R|1|CV, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V6F|1|BC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6F|1|CC, 4V6F|1|BD, 4V6F|1|CB, 4W2I|1|CW, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WPO|1|BY, 4W2I|1|CY, 4WPO|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 5AFI|1|y, 4WQF|1|DW, 4WQF|1|DY, 4WQU|1|BW, 4W2I|1|AY, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2G|1|AW, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2G|1|CY, 4W2G|1|AY, 4W2G|1|CW, 3FOZ|1|D, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4P6F|1|QW, 3J46|1|a, 3L0U|1|A, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5D|1|AV, 1VY4|1|AW, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY4|1|CY, 1VY4|1|AY, 1VY4|1|CW, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 1VY7|1|AY, 1VY7|1|CY, 2ZM5|1|C, 4V5J|1|AW, 4V5L|1|AW, 4V(0) (4) 4Y4P|1|1w, 4Y4P|1|2y, 4Y4P|1|2w, 4Y4P|1|1y
NR_all_19951.3NR_3.0_19951.42.15(51) 1VY4|1|CW, 1VY4|1|AY, 1VY4|1|CY, 1VY4|1|AW, 4W2G|1|CW, 4W2G|1|AY, 4W2H|1|AY, 4W2G|1|CY, 4W2F|1|CW, 4W2F|1|CY, 4W2F|1|AY, 4W2G|1|AW, 4W2E|1|w, 4W2E|1|x, 4V9H|1|AV, 4W2F|1|AW, 4V9D|1|AV, 4V51|1|CW, 4V51|1|AW, 4V9D|1|BV, 3FOZ|1|D, 3L0U|1|A, 3FOZ|1|C, 2ZM5|1|D, 2ZXU|1|C, 2ZM5|1|C, 2ZXU|1|D, 1VY7|1|AY, 1VY5|1|CY, 1VY5|1|CW, 1VY7|1|CY, 1VY5|1|AW, 1VY5|1|AY, 4W2I|1|CY, 4WPO|1|BW, 4W2I|1|CW, 4WPO|1|BY, 4WPO|1|DW, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4WQF|1|DW, 4WQF|1|DY, 4WQF|1|BY, 4WQU|1|BW, 4WQU|1|BY, 4WPO|1|DY, 4WQF|1|BW, 4WQU|1|DY, 5AFI|1|y, 4WQU|1|DW(70) 4V5Q|1|CW, 4V5Q|1|CV, 4V5Q|1|AW, 4V5Q|1|AV, 4V5P|1|CW, 4V5P|1|CV, 4V5P|1|AW, 4V5P|1|AV, 4V5L|1|AW, 4V5L|1|AV, 4V5J|1|CW, 4V5J|1|CV, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V6F|1|CC, 4V6F|1|CB, 4V6F|1|BD, 4V6F|1|BC, 4V6F|1|BB, 4V69|1|AW, 4V5S|1|CW, 4V5S|1|CV, 4V5S|1|AW, 4V5S|1|AV, 4V5R|1|CW, 4V6F|1|CD, 4V5J|1|AW, 4V5J|1|AV, 4V5C|1|CY, 4V5C|1|CW, 4V5C|1|AY, 4V5C|1|AW, 4V4Y|1|AD, 4V4Y|1|AC, 4V4Y|1|AB, 4V4I|1|z, 4P6F|1|XW, 4P6F|1|QW, 3J46|1|a, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5G|1|CW, 4V5G|1|CV, 4V5G|1|AW, 4V5G|1|AV, 4V5E|1|CW, 4V5E|1|CV, 4V5E|1|AW, 4V5E|1|AV, 4V5D|1|CY, 4V5D|1|CW, 4V5D|1|CV, 4V9I|1|CW, 4V6K|1|BB, 4V9C|1|AV, 4V97|1|CW, 4V97|1|AW, 4V8J|1|CW, 4V8J|1|AW, 4V7D|1|BW, 4V7D|1|BV, 4V7C|1|AW, 4V7C|1|AV, 4V6L|1|AE, 4V6L|1|AB, 4V9C|1|CV, 4V9I|1|AW, 4V6K|1|BE(4) 4Y4P|1|1w, 4Y4P|1|2y, 4Y4P|1|1y, 4Y4P|1|2w
NR_all_19951.3NR_3.5_19951.42.15(97) 1VY5|1|CY, 1VY7|1|AY, 1VY5|1|CW, 1VY5|1|AY, 2ZM5|1|C, 2ZM5|1|D, 1VY7|1|CY, 1VY4|1|CW, 1VY4|1|AY, 1VY4|1|AW, 1VY5|1|AW, 1VY4|1|CY, 4V5R|1|AV, 4V5Q|1|CW, 4V5R|1|AW, 4V5R|1|CV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|AV, 4V5S|1|AW, 4V5S|1|CV, 4V5S|1|AV, 4V5S|1|CW, 4V5R|1|CW, 4V5J|1|CW, 4V5L|1|AV, 4V5J|1|CV, 4V5L|1|AW, 4V5J|1|AV, 4V5J|1|AW, 4V5E|1|CW, 4V5P|1|CV, 4V5P|1|CW, 4V5P|1|AV, 4V5P|1|AW, 4W2E|1|w, 4W2E|1|x, 4W2F|1|AW, 4V9H|1|AV, 4V9I|1|AW, 4V9I|1|CW, 4W2G|1|AW, 4W2F|1|CY, 4W2G|1|AY, 4W2G|1|CW, 4W2F|1|AY, 4W2F|1|CW, 4V6F|1|BD, 4V6F|1|CB, 4V6F|1|CC, 4V6F|1|BB, 4V6F|1|BC, 4V9D|1|AV, 4V9C|1|CV, 4V9D|1|BV, 4V6F|1|CD, 4V9C|1|AV, 4WQF|1|BY, 4WQF|1|DW, 4WQF|1|DY, 4WPO|1|DY, 4WPO|1|DW, 4WQF|1|BW, 4WQU|1|DY, 4WQU|1|DW, 5AFI|1|y, 4WQU|1|BW, 4WQU|1|BY, 4W2H|1|CY, 4W2H|1|AY, 4W2I|1|AW, 4W2I|1|AY, 4W2G|1|CY, 4WPO|1|BW, 4WPO|1|BY, 4W2I|1|CY, 4W2I|1|CW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|AW, 4V5D|1|CW, 4V5C|1|CY, 4V5D|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5D|1|CY, 4V5E|1|AV, 3FOZ|1|C, 3FOZ|1|D, 3L0U|1|A, 2ZXU|1|C, 2ZXU|1|D, 4V5C|1|AY, 4V5C|1|AW, (24) 4V5G|1|CV, 4V5G|1|CW, 4V69|1|AW, 4V6K|1|BB, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE, 4V5G|1|AW, 4V5G|1|AV, 4V4Y|1|AD, 4V4Y|1|AC, 4V4Y|1|AB, 4V4I|1|z, 4P6F|1|XW, 4P6F|1|QW, 3J46|1|a, 4V7C|1|AV, 4V7C|1|AW, 4V97|1|CW, 4V97|1|AW, 4V8J|1|CW, 4V8J|1|AW, 4V7D|1|BW, 4V7D|1|BV(4) 4Y4P|1|2w, 4Y4P|1|2y, 4Y4P|1|1y, 4Y4P|1|1w
NR_all_19951.3NR_4.0_19951.42.15(108) 4V6F|1|CD, 4V8J|1|AW, 4V6F|1|CB, 4V6F|1|CC, 4V8J|1|CW, 4V97|1|AW, 4V6F|1|BB, 4V6F|1|BC, 4V5S|1|CV, 4V5S|1|CW, 4V6F|1|BD, 4V9I|1|AW, 4V9I|1|CW, 4V9D|1|BV, 4V9H|1|AV, 4W2E|1|w, 4W2E|1|x, 4V9C|1|AV, 4V9C|1|CV, 4V97|1|CW, 4V9D|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|CW, 4V5Q|1|AV, 4V5J|1|CV, 4V5J|1|CW, 4V5J|1|AV, 4V5J|1|AW, 4V5L|1|AV, 4V5R|1|CW, 4V5S|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5S|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5Q|1|AW, 4V5R|1|AV, 4WPO|1|DY, 4WQF|1|BW, 4WPO|1|DW, 4WQF|1|BY, 4WQF|1|DW, 4WPO|1|BW, 4WPO|1|BY, 4W2I|1|CY, 4WQU|1|DW, 4WQU|1|DY, 4WQU|1|BY, 5AFI|1|y, 4WQF|1|DY, 4WQU|1|BW, 4W2G|1|AW, 4W2F|1|CY, 4W2G|1|AY, 4W2G|1|CW, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2I|1|AW, 4W2I|1|AY, 4W2H|1|CY, 4W2I|1|CW, 4W2G|1|CY, 4W2H|1|AY, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|AV, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5C|1|AW, 4V5C|1|AY, 4V51|1|CW, 4V5C|1|CW, 4V5C|1|CY, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|AV, 4V5G|1|CW, 4V5E|1|CW, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 1VY5|1|CY, 1VY7|1|AY, 1VY5|1|CW, 1VY7|1|CY, 2ZM5|1|C, 2ZM5|1|D, 1VY4|1(13) 4V6K|1|BB, 4V7C|1|AV, 4V7C|1|AW, 4V7D|1|BV, 4V7D|1|BW, 3J46|1|a, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V69|1|AW, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE(4) 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w, 4Y4P|1|2y
NR_all_19951.3NR_all_19951.42.15(121) 4V8J|1|AW, 4V7D|1|BW, 4V7D|1|BV, 4V8J|1|CW, 4V97|1|AW, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V6L|1|AB, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9C|1|CV, 4V97|1|CW, 4V9C|1|AV, 4V5R|1|CV, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V6F|1|BC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6F|1|CC, 4V6F|1|BD, 4V6F|1|CB, 4W2I|1|CW, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WPO|1|BY, 4W2I|1|CY, 4WPO|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 5AFI|1|y, 4WQF|1|DW, 4WQF|1|DY, 4WQU|1|BW, 4W2I|1|AY, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2G|1|AW, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2G|1|CY, 4W2G|1|AY, 4W2G|1|CW, 3FOZ|1|D, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4P6F|1|QW, 3J46|1|a, 3L0U|1|A, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5D|1|AV, 1VY4|1|AW, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY4|1|CY, 1VY4|1|AY, 1VY4|1|CW, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 1VY7|1|AY, 1VY7|1|CY, 2ZM5|1|C, 4V5J|1|AW, 4V5L|1|AW, 4V(0) (4) 4Y4P|1|1w, 4Y4P|1|2y, 4Y4P|1|2w, 4Y4P|1|1y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength