Equivalence class NR_all_20829.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6EXN|1|2+ 6EXN|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Intron lariat: UBC4 RNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 2 | 5LJ3|1|Z+ 5LJ3|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 3 | 5MQ0|1|2+ 5MQ0|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | S.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 4.17 | 2017-01-18 |
| 4 | 5NRL|1|2+ 5NRL|1|4+ 5NRL|1|6 | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | U2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Structure of a pre-catalytic spliceosome | Electron microscopy | 7.2 | 2017-05-31 |
| 5 | 5LJ5|1|Z+ 5LJ5|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Overall structure of the yeast spliceosome immediately after branching. | Electron microscopy | 10 | 2016-08-31 |
Release history
| Release | 3.9 |
|---|---|
| Date | 2018-02-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_20829.4 | NR_all_20829.3 | 3.9 | (4) 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V | (1) 6EXN|1|2+6EXN|1|6 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_20829.4 | NR_all_20829.5 | 3.10 | (5) 5LJ3|1|Z+5LJ3|1|V, 6EXN|1|2+6EXN|1|6, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V | (0) | (1) 6BK8|1|2+6BK8|1|6+6BK8|1|i |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5NRL|1|2+5NRL|1|4+5NRL|1|6 | Structure of a pre-catalytic spliceosome | ELECTRON MICROSCOPY | 7.2 | 152 |
| 2 | 5LJ3|1|Z+5LJ3|1|V | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 171 |
| 3 | 5LJ5|1|Z+5LJ5|1|V | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 171 |
| 4 | 5MQ0|1|2+5MQ0|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 155 |
| 5 | 6EXN|1|2+6EXN|1|6 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 136 |