NR_all_21280.24

Members (87)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4KZY\|1\|i (rep)	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.	X-ray diffraction	7.01	2013-07-24
2	4KZZ\|1\|i	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A	X-ray diffraction	7.03	2013-07-24
3	4KZX\|1\|i	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with eIF1.	X-ray diffraction	7.81	2013-07-24
4	7O7Y\|1\|A2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	2021-06-02
5	7OYD\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	2022-07-20
6	7O7Z\|1\|A2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	2021-06-02
7	7JQB\|1\|A	Small subunit ribosomal RNA	rRNA	Oryctolagus cuniculus	Eukarya	RF01960	SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex	Electron microscopy	2.7	2020-12-02
8	7UCK\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	2022-06-01
9	6SGC\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	2019-12-04
10	7TOR\|1\|A18S	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	2022-05-25
11	7O80\|1\|A2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	2021-06-02
12	7NWI\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	2021-07-07
13	6YAL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage initiation complex with beta-globin mRNA	Electron microscopy	3	2020-04-08
14	6R5Q\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	2019-07-10
15	7TOQ\|1\|A18S	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	2022-05-25
16	7O81\|1\|A2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	2021-06-02
17	6ZVK\|1\|K3	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF01960	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	2020-12-23
18	6P5I\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	2019-09-18
19	6P5K\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	2019-09-18
20	6P5J\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	2019-09-18
21	7UCJ\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	2022-06-01
22	6P4G\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	2019-09-18
23	7MDZ\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	2021-09-01
24	6R6P\|1\|K	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	2019-07-10
25	6P4H\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.2	2019-09-18
26	6P5N\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	2019-09-25
27	6D9J\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	2018-06-06
28	7JQC\|1\|A	Small subunit ribosomal RNA	rRNA	Oryctolagus cuniculus	Eukarya	RF01960	SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex	Electron microscopy	3.3	2020-12-02
29	5LZS\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	2016-11-30
30	6W2T\|1\|a	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)	Electron microscopy	3.36	2020-04-22
31	7A01\|1\|K3	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF01960	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.6	2020-12-30
32	6MTD\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	2018-11-21
33	5LZV\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	2016-11-30
34	6D90\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	2018-06-06
35	7SYS\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).	Electron microscopy	3.5	2022-07-27
36	6YAN\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA	Electron microscopy	3.48	2020-04-08
37	6MTC\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	2018-11-21
38	6MTE\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	2018-11-21
39	6W2S\|1\|A	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)	Electron microscopy	3.47	2020-04-22
40	6GZ5\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	2018-12-05
41	7SYR\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).	Electron microscopy	3.6	2022-07-27
42	5LZZ\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	2016-11-30
43	5LZW\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	2016-11-30
44	5LZX\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	2016-11-30
45	6GZ3\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	2018-12-05
46	7SYX\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)	Electron microscopy	3.7	2022-07-13
47	7SYW\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)	Electron microscopy	3.7	2022-07-13
48	7NWG\|1\|A2	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	Electron microscopy	3.8	2021-07-07
49	6GZ4\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	2018-12-05
50	5LZT\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	2016-11-30
51	6YAM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA	Electron microscopy	3.6	2020-04-08
52	6MTB\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	2018-11-21
53	6HCJ\|1\|A2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	2018-10-17
54	7SYQ\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)	Electron microscopy	3.8	2022-07-27
55	6R6G\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	2019-07-10
56	5LZU\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	2016-11-30
57	6HCF\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	2018-10-17
58	7SYV\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)	Electron microscopy	3.9	2022-07-20
59	6R7Q\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	2019-07-10
60	3JAH\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	2015-08-12
61	5LZY\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	2016-11-30
62	7SYN\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)	Electron microscopy	4	2022-07-13
63	7SYP\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)	Electron microscopy	4	2022-07-27
64	7NWH\|1\|9	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	Electron microscopy	4.1	2021-07-07
65	5FLX\|1\|1	Small subunit ribosomal RNA	18S RRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 40S HCV-IRES complex	Electron microscopy	3.9	2015-12-23
66	3JAG\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	2015-08-12
67	3JAI\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	2015-08-12
68	7SYG\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)	Electron microscopy	4.3	2022-07-13
69	7SYK\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)	Electron microscopy	4.2	2022-07-13
70	7SYT\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)	Electron microscopy	4.4	2022-07-13
71	7SYI\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)	Electron microscopy	4.5	2022-07-13
72	7SYL\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)	Electron microscopy	4.5	2022-07-13
73	7SYU\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)	Electron microscopy	4.6	2022-07-13
74	7SYH\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)	Electron microscopy	4.6	2022-07-13
75	7SYO\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)	Electron microscopy	4.6	2022-07-27
76	7SYM\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)	Electron microscopy	4.8	2022-07-13
77	7SYJ\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)	Electron microscopy	4.8	2022-07-13
78	5K0Y\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face	Electron microscopy	5.8	2016-07-13
79	6HCQ\|1\|A2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	2018-10-17
80	6HCM\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	2018-10-17
81	4UJE\|1\|B1	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	2014-07-16
82	3JAN\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05
83	3JAJ\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05
84	4UJD\|1\|C1	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	2014-07-30
85	4D61\|1\|1	Small subunit ribosomal RNA	18S RRNA	Oryctolagus cuniculus	Eukarya	RF01960	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	2015-03-04
86	4D5L\|1\|1	Small subunit ribosomal RNA	18S RRNA 2	Oryctolagus cuniculus	Eukarya	RF01960	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	2015-02-04
87	4UJC\|1\|C1	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF01960	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	2014-07-30

Release history

Release	3.241	3.242	3.243	3.244	3.245	3.246
Date	2022-07-27	2022-08-03	2022-08-10	2022-08-17	2022-08-24	2022-08-31

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_21280.24	NR_all_21280.23	3.241	(82) 6R7Q\|1\|K, 5FLX\|1\|1, 7OYD\|1\|9, 6MTB\|1\|9, 3JAG\|1\|9, 6ZVK\|1\|K3, 5LZW\|1\|9, 7SYM\|1\|2, 6P5J\|1\|2, 4D61\|1\|1, 7NWH\|1\|9, 6GZ4\|1\|B1, 7TOQ\|1\|A18S, 6YAN\|1\|2, 6GZ3\|1\|B1, 7SYX\|1\|2, 4UJE\|1\|B1, 6P5I\|1\|2, 6HCQ\|1\|A2, 7NWG\|1\|A2, 5LZV\|1\|9, 7SYL\|1\|2, 6R6P\|1\|K, 7O81\|1\|A2, 4D5L\|1\|1, 6YAM\|1\|2, 6D9J\|1\|2, 7SYW\|1\|2, 4UJD\|1\|C1, 6P4H\|1\|2, 6HCM\|1\|A1, 7MDZ\|1\|9, 5LZU\|1\|9, 7SYK\|1\|2, 6R6G\|1\|K, 7O80\|1\|A2, 3JAN\|1\|S2, 6YAL\|1\|2, 6D90\|1\|2, 7SYV\|1\|2, 6P4G\|1\|2, 4UJC\|1\|C1, 6HCJ\|1\|A2, 7UCK\|1\|9, 7JQC\|1\|A, 5LZT\|1\|9, 7SYJ\|1\|2, 6R5Q\|1\|K, 3JAJ\|1\|S2, 7O7Z\|1\|A2, 6W2T\|1\|a, 5LZZ\|1\|9, 7SYU\|1\|2, 6MTE\|1\|9, 4KZZ\|1\|i, 6HCF\|1\|A1, 7UCJ\|1\|9, 7JQB\|1\|A, 5LZS\|1\|9, 7SYI\|1\|2, 6P5N\|1\|2, 3JAI\|1\|9, 7O7Y\|1\|A2, 6W2S\|1\|A, 5LZY\|1\|9, 7SYT\|1\|2, 7SYH\|1\|2, 6MTD\|1\|9, 4KZY\|1\|i, 7A01\|1\|K3, 6GZ5\|1\|B1, 7TOR\|1\|A18S, 5K0Y\|1\|A, 6P5K\|1\|2, 3JAH\|1\|9, 7NWI\|1\|9, 6SGC\|1\|A1, 5LZX\|1\|9, 7SYN\|1\|2, 7SYG\|1\|2, 6MTC\|1\|9, 4KZX\|1\|i	(5) 7SYR\|1\|2, 7SYP\|1\|2, 7SYS\|1\|2, 7SYQ\|1\|2, 7SYO\|1\|2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_21280.24	NR_all_21280.25	3.247	(87) 6D9J\|1\|2, 6P5K\|1\|2, 7MDZ\|1\|9, 7SYN\|1\|2, 4KZY\|1\|i, 6D90\|1\|2, 6P5J\|1\|2, 7JQC\|1\|A, 7SYM\|1\|2, 4KZX\|1\|i, 5LZZ\|1\|9, 6P5I\|1\|2, 7JQB\|1\|A, 7SYL\|1\|2, 7UCK\|1\|9, 4D61\|1\|1, 5LZY\|1\|9, 6P4H\|1\|2, 7A01\|1\|K3, 7SYK\|1\|2, 7UCJ\|1\|9, 4D5L\|1\|1, 5LZX\|1\|9, 6P4G\|1\|2, 6ZVK\|1\|K3, 7SYJ\|1\|2, 7TOR\|1\|A18S, 3JAN\|1\|S2, 5LZW\|1\|9, 6MTE\|1\|9, 6YAN\|1\|2, 7SYI\|1\|2, 7TOQ\|1\|A18S, 3JAJ\|1\|S2, 6MTD\|1\|9, 6YAM\|1\|2, 7SYH\|1\|2, 7SYX\|1\|2, 3JAI\|1\|9, 5LZV\|1\|9, 6MTC\|1\|9, 6YAL\|1\|2, 7SYG\|1\|2, 7SYW\|1\|2, 3JAH\|1\|9, 5LZU\|1\|9, 6MTB\|1\|9, 6W2T\|1\|a, 7OYD\|1\|9, 7SYV\|1\|2, 3JAG\|1\|9, 5LZT\|1\|9, 6HCQ\|1\|A2, 6W2S\|1\|A, 7O81\|1\|A2, 7SYU\|1\|2, 5LZS\|1\|9, 6HCM\|1\|A1, 6SGC\|1\|A1, 7O80\|1\|A2, 7SYT\|1\|2, 5K0Y\|1\|A, 6HCJ\|1\|A2, 6R7Q\|1\|K, 7O7Z\|1\|A2, 7SYS\|1\|2, 5FLX\|1\|1, 6HCF\|1\|A1, 6R6P\|1\|K, 7O7Y\|1\|A2, 7SYR\|1\|2, 4UJE\|1\|B1, 6GZ5\|1\|B1, 6R6G\|1\|K, 7NWI\|1\|9, 7SYQ\|1\|2, 4UJD\|1\|C1, 6GZ4\|1\|B1, 6R5Q\|1\|K, 7NWH\|1\|9, 7SYP\|1\|2, 4UJC\|1\|C1, 6GZ3\|1\|B1, 6P5N\|1\|2, 7NWG\|1\|A2, 7SYO\|1\|2, 4KZZ\|1\|i	(0)	(1) 7ZJX\|1\|S2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4UJD\|1\|C1	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	1742
2	4UJC\|1\|C1	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	1742
3	4D61\|1\|1	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	1742
4	4D5L\|1\|1	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	1742
5	4UJE\|1\|B1	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	1742
6	4KZX\|1\|i	Rabbit 40S ribosomal subunit in complex with eIF1.	X-RAY DIFFRACTION	7.81	1797
7	4KZY\|1\|i	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.	X-RAY DIFFRACTION	7.01	1840
8	4KZZ\|1\|i	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A	X-RAY DIFFRACTION	7.03	1797
9	5K0Y\|1\|A	m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face	ELECTRON MICROSCOPY	5.8	1776
10	6YAN\|1\|2	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA	ELECTRON MICROSCOPY	3.48	1743
11	6YAL\|1\|2	Mammalian 48S late-stage initiation complex with beta-globin mRNA	ELECTRON MICROSCOPY	3	1743
12	6YAM\|1\|2	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA	ELECTRON MICROSCOPY	3.6	1742
13	7NWI\|1\|9	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	1719
14	7A01\|1\|K3	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.6	1801
15	6ZVK\|1\|K3	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	1869
16	3JAI\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	1719
17	3JAG\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	1719
18	3JAH\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	1719
19	3JAJ\|1\|S2	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
20	3JAN\|1\|S2	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
21	6GZ5\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	1708
22	7O81\|1\|A2	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	1688
23	7O7Y\|1\|A2	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	1688
24	7O7Z\|1\|A2	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	1688
25	7O80\|1\|A2	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	1688
26	7TOQ\|1\|A18S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	1690
27	6R6P\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	1698
28	5LZS\|1\|9	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	1697
29	5LZT\|1\|9	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	1698
30	5LZV\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	1698
31	5LZU\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	1698
32	5LZW\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	1698
33	5LZX\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	1698
34	5LZZ\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	1698
35	5LZY\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	1698
36	6SGC\|1\|A1	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	1697
37	7MDZ\|1\|9	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	1697
38	6R6G\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	1698
39	6R5Q\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	1698
40	6R7Q\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	1698
41	6MTC\|1\|9	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	1664
42	6MTB\|1\|9	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	1664
43	7TOR\|1\|A18S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	1691
44	7UCK\|1\|9	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	1664
45	7UCJ\|1\|9	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	1664
46	7JQB\|1\|A	SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex	ELECTRON MICROSCOPY	2.7	1697
47	6P5N\|1\|2	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	1697
48	7SYX\|1\|2	Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)	ELECTRON MICROSCOPY	3.7	1697
49	7SYW\|1\|2	Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)	ELECTRON MICROSCOPY	3.7	1697
50	7SYR\|1\|2	Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).	ELECTRON MICROSCOPY	3.6	1697
51	7SYS\|1\|2	Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).	ELECTRON MICROSCOPY	3.5	1697
52	7SYT\|1\|2	Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)	ELECTRON MICROSCOPY	4.4	1697
53	7SYU\|1\|2	Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)	ELECTRON MICROSCOPY	4.6	1697
54	6D90\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697
55	6HCM\|1\|A1	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	1732
56	6HCF\|1\|A1	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	1732
57	7NWG\|1\|A2	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	ELECTRON MICROSCOPY	3.8	1740
58	6HCQ\|1\|A2	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	1740
59	6HCJ\|1\|A2	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	1740
60	7NWH\|1\|9	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	ELECTRON MICROSCOPY	4.1	1698
61	7SYI\|1\|2	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)	ELECTRON MICROSCOPY	4.5	1697
62	7SYK\|1\|2	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)	ELECTRON MICROSCOPY	4.2	1697
63	7SYG\|1\|2	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)	ELECTRON MICROSCOPY	4.3	1697
64	7SYH\|1\|2	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)	ELECTRON MICROSCOPY	4.6	1697
65	7SYJ\|1\|2	Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)	ELECTRON MICROSCOPY	4.8	1697
66	7SYL\|1\|2	Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)	ELECTRON MICROSCOPY	4.5	1697
67	7JQC\|1\|A	SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex	ELECTRON MICROSCOPY	3.3	1697
68	6P4H\|1\|2	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.2	1697
69	6P4G\|1\|2	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	1697
70	6P5K\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	1697
71	6P5I\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	1697
72	6P5J\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	1697
73	7OYD\|1\|9	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	1664
74	6MTE\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	1664
75	6MTD\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	1692
76	6W2S\|1\|A	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)	ELECTRON MICROSCOPY	3.47	1697
77	7SYM\|1\|2	Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)	ELECTRON MICROSCOPY	4.8	1697
78	6D9J\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697
79	7SYN\|1\|2	Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)	ELECTRON MICROSCOPY	4	1697
80	7SYV\|1\|2	Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)	ELECTRON MICROSCOPY	3.9	1680
81	7SYQ\|1\|2	Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)	ELECTRON MICROSCOPY	3.8	1680
82	7SYP\|1\|2	Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)	ELECTRON MICROSCOPY	4	1680
83	7SYO\|1\|2	Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)	ELECTRON MICROSCOPY	4.6	1697
84	6W2T\|1\|a	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)	ELECTRON MICROSCOPY	3.36	1697
85	5FLX\|1\|1	Mammalian 40S HCV-IRES complex	ELECTRON MICROSCOPY	3.9	1708
86	6GZ3\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	1708
87	6GZ4\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	1708

Equivalence class NR_all_21280.24 Obsolete

Release history

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