NR_all_21280.6

Members (40)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	4KZY\|1\|i (rep)	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.	X-ray diffraction	7.01	1840	2013-07-24
2	4KZZ\|1\|i	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A	X-ray diffraction	7.03	1797	2013-07-24
3	4KZX\|1\|i	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 40S ribosomal subunit in complex with eIF1.	X-ray diffraction	7.81	1797	2013-07-24
4	6D9J\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	1697	2018-06-06
5	5LZS\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	1697	2016-11-30
6	1VX5\|1\|2		18S ribosomal RNA				Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.	Electron microscopy	3.5	0	2014-06-18
7	3J74\|1\|S2		18S ribosomal RNA				Structure of the 80S mammalian ribosome bound to eEF2	Electron microscopy	3.5	1742	2014-06-18
8	6MTD\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	1698	2018-11-21
9	5LZV\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	1698	2016-11-30
10	6D90\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	1697	2018-06-06
11	6MTC\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	1698	2018-11-21
12	6MTE\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	1698	2018-11-21
13	6GZ5\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	1708	2018-12-05
14	5LZZ\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	1698	2016-11-30
15	5LZW\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	1698	2016-11-30
16	5LZX\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	1698	2016-11-30
17	6GZ3\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	1708	2018-12-05
18	6GZ4\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	1708	2018-12-05
19	5LZT\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	1698	2016-11-30
20	6MTB\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	1698	2018-11-21
21	6HCJ\|1\|A2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	1740	2018-10-17
22	1VX2\|1\|2		18S ribosomal RNA				Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.	Electron microscopy	3.9	0	2014-06-18
23	3J73\|1\|S2		18S ribosomal RNA				Structure of the translating mammalian ribosome-Sec61 complex	Electron microscopy	3.9	1742	2014-06-18
24	5LZU\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	1698	2016-11-30
25	6HCF\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	1732	2018-10-17
26	3JAH\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	1719	2015-08-12
27	5LZY\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	1698	2016-11-30
28	5FLX\|1\|1	Small subunit ribosomal RNA	18S RRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 40S HCV-IRES complex	Electron microscopy	3.9	1708	2015-12-23
29	3JAG\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	1719	2015-08-12
30	3JAI\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	1719	2015-08-12
31	5K0Y\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face	Electron microscopy	5.8	1776	2016-07-13
32	6HCQ\|1\|A2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	1740	2018-10-17
33	6HCM\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	1732	2018-10-17
34	4UJE\|1\|B1	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	1742	2014-07-16
35	3JAN\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	1742	2015-08-05
36	3JAJ\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	1742	2015-08-05
37	4UJD\|1\|C1	Small subunit ribosomal RNA	18S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	1742	2014-07-30
38	4D61\|1\|1	Small subunit ribosomal RNA	18S RRNA	Oryctolagus cuniculus	Eukarya	RF01960	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	1742	2015-03-04
39	4D5L\|1\|1	Small subunit ribosomal RNA	18S RRNA 2	Oryctolagus cuniculus	Eukarya	RF01960	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	1742	2015-02-04
40	4UJC\|1\|C1	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF01960	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	1742	2014-07-30

Release history

Release	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81
Date	2018-12-07	2018-12-14	2018-12-21	2018-12-28	2019-01-04	2019-01-11	2019-01-18	2019-01-25	2019-02-01	2019-02-08	2019-02-15	2019-02-22	2019-03-01	2019-03-08	2019-03-15	2019-03-22	2019-03-29	2019-04-05	2019-04-12	2019-04-19	2019-04-26	2019-05-03	2019-05-10	2019-05-17	2019-05-24	2019-05-31	2019-06-07	2019-06-14	2019-06-21	2019-06-28	2019-07-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_21280.6	NR_all_21280.5	3.51	(37) 1VX2\|1\|2, 1VX5\|1\|2, 3J73\|1\|S2, 3J74\|1\|S2, 3JAG\|1\|9, 3JAH\|1\|9, 3JAI\|1\|9, 3JAJ\|1\|S2, 3JAN\|1\|S2, 4D5L\|1\|1, 4D61\|1\|1, 4KZX\|1\|i, 4KZY\|1\|i, 4KZZ\|1\|i, 4UJC\|1\|C1, 4UJD\|1\|C1, 4UJE\|1\|B1, 5FLX\|1\|1, 5K0Y\|1\|A, 5LZS\|1\|9, 5LZT\|1\|9, 5LZU\|1\|9, 5LZV\|1\|9, 5LZW\|1\|9, 5LZX\|1\|9, 5LZY\|1\|9, 5LZZ\|1\|9, 6D90\|1\|2, 6D9J\|1\|2, 6HCF\|1\|A1, 6HCJ\|1\|A2, 6HCM\|1\|A1, 6HCQ\|1\|A2, 6MTB\|1\|9, 6MTC\|1\|9, 6MTD\|1\|9, 6MTE\|1\|9	(3) 6GZ3\|1\|B1, 6GZ4\|1\|B1, 6GZ5\|1\|B1	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	4UJD\|1\|C1	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	1742
2	4UJC\|1\|C1	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	1742
3	4D5L\|1\|1	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	1742
4	4D61\|1\|1	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	1742
5	4UJE\|1\|B1	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	1742
6	5K0Y\|1\|A	m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face	ELECTRON MICROSCOPY	5.8	1776
7	4KZX\|1\|i	Rabbit 40S ribosomal subunit in complex with eIF1.	X-RAY DIFFRACTION	7.81	1797
8	4KZY\|1\|i	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.	X-RAY DIFFRACTION	7.01	1840
9	4KZZ\|1\|i	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A	X-RAY DIFFRACTION	7.03	1797
10	3JAN\|1\|S2	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
11	3JAJ\|1\|S2	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
12	3JAH\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	1719
13	3JAG\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	1719
14	3JAI\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	1719
15	6GZ5\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	1708
16	5LZS\|1\|9	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	1697
17	5LZT\|1\|9	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	1698
18	5LZV\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	1698
19	5LZU\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	1698
20	5LZW\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	1698
21	5LZX\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	1698
22	5LZZ\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	1698
23	5LZY\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	1698
24	6MTC\|1\|9	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	1698
25	6MTB\|1\|9	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	1698
26	6HCJ\|1\|A2	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	1740
27	6HCQ\|1\|A2	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	1740
28	6HCF\|1\|A1	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	1732
29	6HCM\|1\|A1	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	1732
30	6D90\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697
31	3J73\|1\|S2	Structure of the translating mammalian ribosome-Sec61 complex	ELECTRON MICROSCOPY	3.9	1742
32	1VX2\|1\|2	Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.	ELECTRON MICROSCOPY	3.9	0
33	1VX5\|1\|2	Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.	ELECTRON MICROSCOPY	3.5	0
34	3J74\|1\|S2	Structure of the 80S mammalian ribosome bound to eEF2	ELECTRON MICROSCOPY	3.5	1742
35	6D9J\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697
36	5FLX\|1\|1	Mammalian 40S HCV-IRES complex	ELECTRON MICROSCOPY	3.9	1708
37	6GZ3\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	1708
38	6GZ4\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	1708
39	6MTD\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	1698
40	6MTE\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	1698

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_21280.6 Obsolete

Release history

Parents

Children