Equivalence class NR_all_21280.6 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4KZY|1|i (rep) | 18S Ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 2013-07-24 |
| 2 | 4KZZ|1|i | 18S Ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 2013-07-24 |
| 3 | 4KZX|1|i | 18S ribosomal RNA | Oryctolagus cuniculus | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 2013-07-24 |
| 4 | 6D9J|1|2 | 18S rRNA | Oryctolagus cuniculus | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 2018-06-06 |
| 5 | 5LZS|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 2016-11-30 |
| 6 | 1VX5|1|2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.5 | 2014-06-18 | |
| 7 | 3J74|1|S2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 2014-06-18 | |
| 8 | 6MTD|1|9 | 18S rRNA | Oryctolagus cuniculus | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 2018-11-21 |
| 9 | 5LZV|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 2016-11-30 |
| 10 | 6D90|1|2 | 18S rRNA | Oryctolagus cuniculus | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 2018-06-06 |
| 11 | 6MTC|1|9 | 18S rRNA | Oryctolagus cuniculus | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 2018-11-21 |
| 12 | 6MTE|1|9 | 18S rRNA | Oryctolagus cuniculus | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 2018-11-21 |
| 13 | 6GZ5|1|B1 | 18S ribosomal RNA | Oryctolagus cuniculus | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 2018-12-05 |
| 14 | 5LZZ|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 2016-11-30 |
| 15 | 5LZW|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 2016-11-30 |
| 16 | 5LZX|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 2016-11-30 |
| 17 | 6GZ3|1|B1 | 18S ribosomal RNA | Oryctolagus cuniculus | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 2018-12-05 |
| 18 | 6GZ4|1|B1 | 18S ribosomal RNA | Oryctolagus cuniculus | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 2018-12-05 |
| 19 | 5LZT|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 2016-11-30 |
| 20 | 6MTB|1|9 | 18S rRNA | Oryctolagus cuniculus | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 2018-11-21 |
| 21 | 6HCJ|1|A2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 2018-10-17 |
| 22 | 1VX2|1|2 | 18S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.9 | 2014-06-18 | |
| 23 | 3J73|1|S2 | 18S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 2014-06-18 | |
| 24 | 5LZU|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 2016-11-30 |
| 25 | 6HCF|1|A1 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 2018-10-17 |
| 26 | 3JAH|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 2015-08-12 |
| 27 | 5LZY|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 2016-11-30 |
| 28 | 5FLX|1|1 | 18S RRNA | Oryctolagus cuniculus | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 2015-12-23 |
| 29 | 3JAG|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 30 | 3JAI|1|9 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 2015-08-12 |
| 31 | 5K0Y|1|A | 18S ribosomal RNA | Oryctolagus cuniculus | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 2016-07-13 |
| 32 | 6HCQ|1|A2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 2018-10-17 |
| 33 | 6HCM|1|A1 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 2018-10-17 |
| 34 | 4UJE|1|B1 | 18S Ribosomal RNA | Oryctolagus cuniculus | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 2014-07-16 |
| 35 | 3JAN|1|S2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 36 | 3JAJ|1|S2 | 18S ribosomal RNA | Oryctolagus cuniculus | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 2015-08-05 |
| 37 | 4UJD|1|C1 | 18S Ribosomal RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 2014-07-30 |
| 38 | 4D61|1|1 | 18S RRNA | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-03-04 |
| 39 | 4D5L|1|1 | 18S RRNA 2 | Oryctolagus cuniculus | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 2015-02-04 |
| 40 | 4UJC|1|C1 | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 2014-07-30 |
Release history
| Release | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_21280.6 | NR_all_21280.5 | 3.51 | (37) 5LZX|1|9, 3J73|1|S2, 6MTC|1|9, 4KZZ|1|i, 5LZW|1|9, 4KZY|1|i, 1VX5|1|2, 6MTB|1|9, 5LZV|1|9, 4KZX|1|i, 1VX2|1|2, 6HCQ|1|A2, 5LZU|1|9, 4D61|1|1, 6HCM|1|A1, 5LZT|1|9, 4D5L|1|1, 6HCJ|1|A2, 5LZS|1|9, 3JAN|1|S2, 6HCF|1|A1, 5K0Y|1|A, 3JAJ|1|S2, 6D9J|1|2, 5FLX|1|1, 3JAI|1|9, 6D90|1|2, 4UJE|1|B1, 3JAH|1|9, 5LZZ|1|9, 4UJD|1|C1, 3JAG|1|9, 6MTE|1|9, 5LZY|1|9, 4UJC|1|C1, 3J74|1|S2, 6MTD|1|9 | (3) 6GZ3|1|B1, 6GZ5|1|B1, 6GZ4|1|B1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UJD|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 |
| 2 | 4UJC|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 |
| 3 | 4D5L|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 4 | 4D61|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 |
| 5 | 4UJE|1|B1 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 |
| 6 | 5K0Y|1|A | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 1776 |
| 7 | 4KZX|1|i | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 |
| 8 | 4KZY|1|i | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 |
| 9 | 4KZZ|1|i | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 |
| 10 | 3JAN|1|S2 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 |
| 11 | 3JAJ|1|S2 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 |
| 12 | 3JAH|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 1719 |
| 13 | 3JAG|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 |
| 14 | 3JAI|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 |
| 15 | 6GZ5|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 1708 |
| 16 | 5LZS|1|9 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 1697 |
| 17 | 5LZT|1|9 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 1698 |
| 18 | 5LZV|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 1698 |
| 19 | 5LZU|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 1698 |
| 20 | 5LZW|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 1698 |
| 21 | 5LZX|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 1698 |
| 22 | 5LZZ|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 1698 |
| 23 | 5LZY|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 1698 |
| 24 | 6MTC|1|9 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 1664 |
| 25 | 6MTB|1|9 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 1664 |
| 26 | 6HCJ|1|A2 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 1740 |
| 27 | 6HCQ|1|A2 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 1740 |
| 28 | 6HCF|1|A1 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 1732 |
| 29 | 6HCM|1|A1 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 1732 |
| 30 | 6D90|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 |
| 31 | 3J73|1|S2 | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 32 | 1VX2|1|2 | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 33 | 1VX5|1|2 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.5 | 1742 |
| 34 | 3J74|1|S2 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 1742 |
| 35 | 6D9J|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 |
| 36 | 5FLX|1|1 | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 1708 |
| 37 | 6GZ3|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 1708 |
| 38 | 6GZ4|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 1708 |
| 39 | 6MTD|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 1692 |
| 40 | 6MTE|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 1664 |