Equivalence class NR_all_21736.6 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6D30|1|C (rep) | RNA (5'-R(UP*U)-3') | synthetic construct | Structure of human Usb1 with uridine-uridine, inactive H208Q mutant | X-RAY DIFFRACTION | 1.17 | 2018-09-05 |
| 2 | 6J7Z|1|C | RNA (5'-R(P*UP*U)-3') | synthetic construct | Human mitochondrial Oligoribonuclease in complex with RNA | X-RAY DIFFRACTION | 2.01 | 2019-08-28 |
| 3 | 3ER9|1|D | 5'-R(UP*U)-3' | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2009-06-16 | |
| 4 | 5KAL|1|Y | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2016-10-26 |
| 5 | 4NIA|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 6 | 5KAL|1|Z | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2016-10-26 |
| 7 | 4NIA|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 8 | 4NIA|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 9 | 5NEW|1|C | RNA (5'-R(P*UP*U)-3') | Escherichia coli | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 2017-10-04 |
| 10 | 4NIA|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 11 | 4NIA|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 12 | 4NIA|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 13 | 4OQ9|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 14 | 4NIA|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 15 | 4NIA|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 16 | 4OQ9|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 17 | 4NIA|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 18 | 4OQ9|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 19 | 4OQ9|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 20 | 4OQ9|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 21 | 4NIA|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 22 | 4OQ9|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 23 | 2VRT|1|E | 5'-R(*UP*UP)-3' | Escherichia coli | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2008-07-22 |
| 24 | 4NIA|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 25 | 4NIA|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 26 | 4OQ9|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 27 | 4OQ8|1|D | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 28 | 4NIA|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 29 | 4OQ9|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 30 | 4OQ9|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 31 | 4NIA|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 32 | 4NIA|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2014-09-10 |
| 33 | 2VRT|1|F | 5'-R(*UP*UP)-3' | Escherichia coli | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2008-07-22 |
| 34 | 4OQ9|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 35 | 4OQ9|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 36 | 4OQ9|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 37 | 4OQ9|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 38 | 4OQ9|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
| 39 | 1DDL|1|E | RNA (5'-R(P*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2000-10-30 | |
| 40 | 4OQ9|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2014-09-10 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_21736.6 | NR_all_21736.5 | 3.89 | (39) 4OQ9|1|7, 4OQ9|1|6, 4OQ9|1|5, 4OQ9|1|4, 4OQ9|1|3, 4OQ9|1|2, 4OQ9|1|1, 4OQ8|1|D, 4NIA|1|z, 4NIA|1|y, 4NIA|1|x, 4NIA|1|w, 4NIA|1|v, 4NIA|1|u, 4NIA|1|t, 4NIA|1|8, 4NIA|1|7, 4NIA|1|6, 4NIA|1|5, 4NIA|1|4, 4NIA|1|3, 6D30|1|C, 4NIA|1|2, 5NEW|1|C, 4NIA|1|1, 5KAL|1|Z, 3ER9|1|D, 5KAL|1|Y, 2VRT|1|F, 4OQ9|1|z, 2VRT|1|E, 4OQ9|1|y, 1DDL|1|E, 4OQ9|1|x, 4OQ9|1|w, 4OQ9|1|v, 4OQ9|1|u, 4OQ9|1|t, 4OQ9|1|8 | (1) 6J7Z|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4NIA|1|2 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 2 | 1DDL|1|E | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2 |
| 3 | 4NIA|1|7 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 4 | 4NIA|1|8 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 5 | 4NIA|1|y | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 6 | 4OQ9|1|8 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 7 | 4NIA|1|u | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 8 | 4OQ9|1|7 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 9 | 4OQ9|1|y | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 10 | 4OQ9|1|z | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 11 | 4OQ9|1|1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 12 | 4OQ9|1|4 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 13 | 4NIA|1|z | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 14 | 4NIA|1|1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 15 | 4OQ9|1|5 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 16 | 4NIA|1|4 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 17 | 4NIA|1|5 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 18 | 4NIA|1|6 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 19 | 2VRT|1|F | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 20 | 2VRT|1|E | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 21 | 3ER9|1|D | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2 |
| 22 | 4OQ9|1|6 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 23 | 4OQ9|1|u | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 24 | 6J7Z|1|C | Human mitochondrial Oligoribonuclease in complex with RNA | X-RAY DIFFRACTION | 2.01 | 2 |
| 25 | 4NIA|1|t | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 26 | 4NIA|1|w | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 27 | 4OQ9|1|v | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 28 | 4NIA|1|v | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 29 | 4OQ8|1|D | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 30 | 4OQ9|1|x | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 31 | 4OQ9|1|3 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 32 | 5KAL|1|Y | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 |
| 33 | 5KAL|1|Z | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 |
| 34 | 4OQ9|1|t | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 35 | 4OQ9|1|2 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 36 | 6D30|1|C | Structure of human Usb1 with uridine-uridine, inactive H208Q mutant | X-RAY DIFFRACTION | 1.17 | 2 |
| 37 | 5NEW|1|C | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 2 |
| 38 | 4NIA|1|3 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 39 | 4NIA|1|x | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 40 | 4OQ9|1|w | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |