Equivalence class NR_all_21756.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GNA|1|C+ 8GNA|1|J (rep) | RNA (32-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR complex | Electron microscopy | 2.8 | 2023-01-18 | |||
| 2 | 8D9G|1|C+ 8D9G|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*GP*AP*U)-3') | Candidatus Scalindua brodae | gRAMP-TPR-CHAT Non match PFS target RNA(Craspase) | Electron microscopy | 2.57 | 2023-06-14 | |||
| 3 | 7Y8T|1|D | RNA (37-MER) | Candidatus Scalindua brodae | Structure of Cas7-11-crRNA in complex with TPR-CHAT | Electron microscopy | 2.9 | 2023-06-28 | |||
| 4 | 7X8A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 2.8 | 2022-11-16 | |||
| 5 | 7XC7|1|C+ 7XC7|1|J | RNA (33-MER), RNA (46-mer) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 3.1 | 2022-11-16 | |||
| 6 | 7Y8Y|1|D+ 7Y8Y|1|E | RNA (37-MER), RNA (5'-R(P*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*C)-3') | Candidatus Scalindua brodae | Structure of Cas7-11-crRNA-tgRNA in complex with TPR-CHAT | Electron microscopy | 3 | 2023-06-28 | |||
| 7 | 8D9F|1|C | RNA (33-MER) | Candidatus Scalindua brodae | gRAMP-TPR-CHAT (Craspase) | Electron microscopy | 2.71 | 2023-06-14 | |||
| 8 | 7X7A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | Electron microscopy | 3.2 | 2022-11-16 | |||
| 9 | 8GU6|1|C+ 8GU6|1|J | RNA (33-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | Electron microscopy | 3.1 | 2023-01-18 | |||
| 10 | 7X7R|1|C+ 7X7R|1|J | RNA (36-MER), RNA (5'-R(P*AP*GP*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*G)-3') | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein | Electron microscopy | 3.5 | 2022-11-16 | |||
| 11 | 8D9H|1|C+ 8D9H|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | gRAMP-TPR-CHAT match PFS target RNA(Craspase) | Electron microscopy | 3.6 | 2023-06-14 | |||
| 12 | 8D8N|1|C+ 8D8N|1|D | RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*A)-3') | Candidatus Scalindua brodae | gRAMP non-match PFS target RNA | Electron microscopy | 3.6 | 2022-08-31 | |||
| 13 | 8D9E|1|C+ 8D9E|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*UP*A)-3') | Candidatus Scalindua brodae | gRAMP-match PFS target | Electron microscopy | 3.76 | 2023-06-14 | |||
| 14 | 8D9I|1|C+ 8D9I|1|D | RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*A)-3') | Candidatus Scalindua brodae | gRAMP non-matching PFS-with Mg | Electron microscopy | 3.62 | 2023-06-14 |
Release history
| Release | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_21756.2 | NR_all_21756.1 | 3.289 | (12) 8GU6|1|C+8GU6|1|J, 8GNA|1|C+8GNA|1|J, 8D9I|1|C+8D9I|1|D, 8D9H|1|C+8D9H|1|D, 8D9G|1|C+8D9G|1|D, 8D9F|1|C, 8D9E|1|C+8D9E|1|D, 8D8N|1|C+8D8N|1|D, 7XC7|1|C+7XC7|1|J, 7X8A|1|C, 7X7R|1|C+7X7R|1|J, 7X7A|1|C | (2) 7Y8T|1|D, 7Y8Y|1|D+7Y8Y|1|E | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7X7R|1|C+7X7R|1|J | Cryo-EM structure of a bacterial protein | ELECTRON MICROSCOPY | 3.5 | 36 |
| 2 | 7X7A|1|C | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | ELECTRON MICROSCOPY | 3.2 | 33 |
| 3 | 7X8A|1|C | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 2.8 | 33 |
| 4 | 8GNA|1|C+8GNA|1|J | Structure of the SbCas7-11-crRNA-NTR complex | ELECTRON MICROSCOPY | 2.8 | 32 |
| 5 | 8GU6|1|C+8GU6|1|J | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | ELECTRON MICROSCOPY | 3.1 | 33 |
| 6 | 7XC7|1|C+7XC7|1|J | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 3.1 | 31 |
| 7 | 8D9G|1|C+8D9G|1|D | gRAMP-TPR-CHAT Non match PFS target RNA(Craspase) | ELECTRON MICROSCOPY | 2.57 | 36 |
| 8 | 8D9I|1|C+8D9I|1|D | gRAMP non-matching PFS-with Mg | ELECTRON MICROSCOPY | 3.62 | 35 |
| 9 | 8D8N|1|C+8D8N|1|D | gRAMP non-match PFS target RNA | ELECTRON MICROSCOPY | 3.6 | 35 |
| 10 | 8D9H|1|C+8D9H|1|D | gRAMP-TPR-CHAT match PFS target RNA(Craspase) | ELECTRON MICROSCOPY | 3.6 | 36 |
| 11 | 8D9E|1|C+8D9E|1|D | gRAMP-match PFS target | ELECTRON MICROSCOPY | 3.76 | 36 |
| 12 | 8D9F|1|C | gRAMP-TPR-CHAT (Craspase) | ELECTRON MICROSCOPY | 2.71 | 33 |
| 13 | 7Y8Y|1|D+7Y8Y|1|E | Structure of Cas7-11-crRNA-tgRNA in complex with TPR-CHAT | ELECTRON MICROSCOPY | 3 | 37 |
| 14 | 7Y8T|1|D | Structure of Cas7-11-crRNA in complex with TPR-CHAT | ELECTRON MICROSCOPY | 2.9 | 37 |