Equivalence class NR_all_24890.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6GSL|1|1L (rep) | Transfer RNA | tRNAArg, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 2018-07-04 |
| 2 | 6GSL|1|1K | Transfer RNA | tRNAArg, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 2018-07-04 |
| 3 | 6TBV|1|PTR1 | Transfer RNA | P-site Arg-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) | ELECTRON MICROSCOPY | 2.7 | 2020-01-01 |
| 4 | 6TC3|1|PTR1 | Transfer RNA | P-site Arg-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) | ELECTRON MICROSCOPY | 2.7 | 2020-01-01 |
| 5 | 7NSQ|1|v | Transfer RNA | AtRNA (Arg), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | ELECTRON MICROSCOPY | 3.1 | 2021-07-14 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_24890.2 | NR_all_24890.1 | 3.187 | (4) 6TC3|1|PTR1, 6TBV|1|PTR1, 6GSL|1|1L, 6GSL|1|1K | (1) 7NSQ|1|v | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_24890.2 | NR_all_24890.3 | 3.191 | (5) 7NSQ|1|v, 6TC3|1|PTR1, 6TBV|1|PTR1, 6GSL|1|1L, 6GSL|1|1K | (0) | (1) 7NSP|1|v |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6GSL|1|1K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 65 |
| 2 | 6GSL|1|1L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 67 |
| 3 | 7NSQ|1|v | Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | ELECTRON MICROSCOPY | 3.1 | 77 |
| 4 | 6TBV|1|PTR1 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) | ELECTRON MICROSCOPY | 2.7 | 69 |
| 5 | 6TC3|1|PTR1 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) | ELECTRON MICROSCOPY | 2.7 | 69 |