Equivalence class NR_all_24936.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8PFQ|1|A (rep) | Chains: A,B | synthetic construct | RNA structure with 1-methylpseudoridine, P1 space group | X-ray diffraction | 1.01 | 2024-01-31 | |||
| 2 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | synthetic construct | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 2021-02-03 | |||
| 3 | 8PFQ|1|B | Chains: A,B | synthetic construct | RNA structure with 1-methylpseudoridine, P1 space group | X-ray diffraction | 1.01 | 2024-01-31 | |||
| 4 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | chemical production metagenome | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 2020-02-19 | |||
| 5 | 2Q1R|1|A | RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-ray diffraction | 1.12 | 2007-10-30 | ||||
| 6 | 8PFK|1|A | RNA (12-mer) | synthetic construct | RNA structure with 1-methylpseudoridine, C2 space group | X-ray diffraction | 1.321 | 2024-01-31 | |||
| 7 | 7LO9|1|A+ 7LO9|1|B | Chains: A,B,C,D | synthetic construct | RNA dodecamer containing a GNA A residue | X-ray diffraction | 1.78 | 2021-12-22 | |||
| 8 | 7LO9|1|C+ 7LO9|1|D | Chains: A,B,C,D | synthetic construct | RNA dodecamer containing a GNA A residue | X-ray diffraction | 1.78 | 2021-12-22 | |||
| 9 | 157D|1|A+ 157D|1|B | RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | X-ray diffraction | 1.8 | 1994-05-31 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2Q1R|1|A | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-RAY DIFFRACTION | 1.12 | 12 |
| 2 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 11 |
| 3 | 157D|1|A+157D|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | X-RAY DIFFRACTION | 1.8 | 12 |
| 4 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 12 |
| 5 | 8PFK|1|A | RNA structure with 1-methylpseudoridine, C2 space group | X-RAY DIFFRACTION | 1.321 | 11 |
| 6 | 8PFQ|1|B | RNA structure with 1-methylpseudoridine, P1 space group | X-RAY DIFFRACTION | 1.01 | 11 |
| 7 | 8PFQ|1|A | RNA structure with 1-methylpseudoridine, P1 space group | X-RAY DIFFRACTION | 1.01 | 11 |
| 8 | 7LO9|1|A+7LO9|1|B | RNA dodecamer containing a GNA A residue | X-RAY DIFFRACTION | 1.78 | 10 |
| 9 | 7LO9|1|C+7LO9|1|D | RNA dodecamer containing a GNA A residue | X-RAY DIFFRACTION | 1.78 | 10 |