#IFECompound(s)RNA source organismTitleMethodResolutionDate
11I5L|1|Y (rep)5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.752001-08-28
21MVR|1|1mRNA, triplet codon (A-site)Escherichia coliDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.82003-04-01
34V68|1|A0MRNA CODONT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
41I5L|1|U5'-R(*UP*UP*U)-3'CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.752001-08-28
54DR7|1|b5'-R(P*UP*UP*U)-3'Thermus thermophilusCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.752012-11-14

Release history

Release2.0
Date2014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_27949.1NR_20.0_27949.22.1(5) 4DR7|1|b, 1MVR|1|1, 1I5L|1|Y, 1I5L|1|U, 4V68|1|A0(0) (1) 4DR6|1|b
NR_all_27949.1NR_3.0_27949.22.1(2) 1I5L|1|U, 1I5L|1|Y(3) 4V68|1|A0, 4DR7|1|b, 1MVR|1|1(0)
NR_all_27949.1NR_3.5_27949.22.1(2) 1I5L|1|U, 1I5L|1|Y(3) 1MVR|1|1, 4DR7|1|b, 4V68|1|A0(1) 4DR6|1|b
NR_all_27949.1NR_4.0_27949.22.1(3) 1I5L|1|Y, 1I5L|1|U, 4DR7|1|b(2) 1MVR|1|1, 4V68|1|A0(1) 4DR6|1|b
NR_all_27949.1NR_all_27949.22.1(5) 4V68|1|A0, 1I5L|1|U, 4DR7|1|b, 1MVR|1|1, 1I5L|1|Y(0) (1) 4DR6|1|b

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MVR|1|1Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.83
24V68|1|A0T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.43
34DR7|1|bCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.753
41I5L|1|UCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753
51I5L|1|YCRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNAX-RAY DIFFRACTION2.753