Equivalence class NR_all_27949.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1I5L|1|Y (rep) | 5'-R(*UP*UP*U)-3' | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-ray diffraction | 2.75 | 2001-08-28 | ||||
| 2 | 1MVR|1|1 | mRNA, triplet codon (A-site) | Escherichia coli | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | Electron microscopy | 12.8 | 2003-04-01 | |||
| 3 | 5MQ0|1|3 | 3'-EXON OF UBC4 PRE-MRNA, BOUND BY PRP22 HELICASE | Saccharomyces cerevisiae | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 4.17 | 2017-01-18 | |||
| 4 | 4V68|1|A0 | MRNA CODON | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | Electron microscopy | 6.4 | 2014-07-09 | ||||
| 5 | 1I5L|1|U | 5'-R(*UP*UP*U)-3' | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-ray diffraction | 2.75 | 2001-08-28 | ||||
| 6 | 4DR7|1|b | 5'-R(P*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 | |||
| 7 | 4DR6|1|b | 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-ray diffraction | 3.3 | 2012-11-14 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1I5L|1|Y | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-RAY DIFFRACTION | 2.75 | 3 |
| 2 | 1I5L|1|U | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-RAY DIFFRACTION | 2.75 | 3 |
| 3 | 5MQ0|1|3 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 3 |
| 4 | 4V68|1|A0 | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 3 |
| 5 | 4DR7|1|b | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 3 |
| 6 | 4DR6|1|b | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-RAY DIFFRACTION | 3.3 | 2 |
| 7 | 1MVR|1|1 | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | ELECTRON MICROSCOPY | 12.8 | 3 |