Equivalence class NR_all_29090.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4J7L|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-ray diffraction | 1.8 | 2013-03-27 | |||
2 | 5W0M|1|J | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
3 | 5BUD|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | |||
4 | 5W0M|1|I | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
5 | 5W0M|1|H | U5 single-stranded RNA | synthetic construct | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | |||
6 | 4J7M|1|B | RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3') | synthetic construct | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-ray diffraction | 1.7 | 2013-03-27 | |||
7 | 5BUD|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | |||
8 | 6A4E|1|B | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | |||
9 | 6A4E|1|D | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | |||
10 | 5FN1|1|B | 5'-R(*UP*UP*UP*UP*UP)-3' | Pepino mosaic virus | Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus) | Electron microscopy | 3.9 | 2015-12-30 | |||
11 | 5ODV|1|a | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
12 | 5ODV|1|b | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
13 | 5ODV|1|c | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
14 | 5ODV|1|d | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
15 | 5ODV|1|e | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
16 | 5ODV|1|f | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
17 | 5ODV|1|g | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
18 | 5ODV|1|h | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
19 | 5ODV|1|i | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
20 | 5ODV|1|j | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
21 | 5ODV|1|k | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
22 | 5ODV|1|l | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
23 | 5ODV|1|m | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
24 | 5ODV|1|n | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
25 | 5ODV|1|o | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
26 | 5ODV|1|p | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
27 | 5ODV|1|q | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
28 | 5ODV|1|r | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
29 | 5ODV|1|s | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
30 | 5ODV|1|t | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
31 | 5ODV|1|u | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
32 | 5ODV|1|v | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
33 | 5ODV|1|w | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 | |||
34 | 5ODV|1|x | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Watermelon mosaic virus | Structure of Watermelon mosaic virus potyvirus. | Electron microscopy | 4 | 2017-09-27 |
Release history
Release | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 |
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_29090.1 | NR_all_17996.1 | 3.86 | (34) 5ODV|1|o, 5ODV|1|h, 6A4E|1|B, 5ODV|1|t, 5ODV|1|m, 5ODV|1|a, 5ODV|1|f, 5W0M|1|H, 5ODV|1|r, 5BUD|1|D, 5ODV|1|k, 5ODV|1|w, 5ODV|1|c, 5ODV|1|p, 4J7L|1|B, 5ODV|1|u, 5W0M|1|I, 5BUD|1|E, 5ODV|1|x, 5ODV|1|d, 5ODV|1|i, 6A4E|1|D, 5ODV|1|n, 5ODV|1|g, 5ODV|1|s, 5ODV|1|l, 5ODV|1|q, 4J7M|1|B, 5ODV|1|v, 5ODV|1|b, 5W0M|1|J, 5FN1|1|B, 5ODV|1|e, 5ODV|1|j | (0) | (35) 6HXX|1|Ba, 6HXX|1|An, 6HXX|1|Af, 6HXX|1|Bc, 6HXX|1|Ap, 6HXX|1|Ab, 6HXX|1|Ad, 6HXX|1|Be, 6HXX|1|Ar, 6HXX|1|Az, 6HXX|1|At, 6HXX|1|Bb, 6HXX|1|Ah, 6HXX|1|Bd, 6HXX|1|Av, 6HXX|1|Aj, 6HXX|1|Bf, 6HXX|1|Al, 6HXX|1|Bh, 6HXX|1|Ag, 6HXX|1|Aa, 6HXX|1|Ai, 6HXX|1|Ax, 6HXX|1|Ak, 6HXX|1|Ac, 6HXX|1|Am, 6HXX|1|Ao, 6HXX|1|Aw, 6HXX|1|Aq, 6HXX|1|Ay, 6HXX|1|Ae, 6HXX|1|As, 6HXX|1|Bg, 6HXX|1|Au, 6HXX|1|Bi |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6A4E|1|B | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |
2 | 4J7M|1|B | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-RAY DIFFRACTION | 1.7 | 3 |
3 | 4J7L|1|B | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-RAY DIFFRACTION | 1.8 | 5 |
4 | 5BUD|1|D | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 4 |
5 | 5BUD|1|E | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 5 |
6 | 5ODV|1|f | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
7 | 5ODV|1|g | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
8 | 5ODV|1|s | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
9 | 5ODV|1|w | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
10 | 5ODV|1|t | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
11 | 5ODV|1|u | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
12 | 5ODV|1|i | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
13 | 5ODV|1|a | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
14 | 5ODV|1|r | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
15 | 5ODV|1|p | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
16 | 5ODV|1|j | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
17 | 5ODV|1|b | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
18 | 5ODV|1|c | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
19 | 5ODV|1|d | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
20 | 5ODV|1|k | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
21 | 5ODV|1|e | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
22 | 5ODV|1|q | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
23 | 5ODV|1|l | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
24 | 5ODV|1|h | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
25 | 5ODV|1|o | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
26 | 5ODV|1|m | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
27 | 5ODV|1|v | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
28 | 5ODV|1|n | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
29 | 5ODV|1|x | Structure of Watermelon mosaic virus potyvirus. | ELECTRON MICROSCOPY | 4 | 5 |
30 | 5W0M|1|J | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
31 | 5W0M|1|I | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
32 | 5W0M|1|H | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
33 | 5FN1|1|B | Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus) | ELECTRON MICROSCOPY | 3.9 | 5 |
34 | 6A4E|1|D | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |